Variant report

Variant	rs73583925
Chromosome Location	chr11:102077244-102077245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1894116	0.82[AFR][1000 genomes]
rs57133241	0.97[AFR][1000 genomes]
rs73583920	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
2	chr11:102056000-102078400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:102059600-102100400	Weak transcription	Gastric	stomach
4	chr11:102062800-102096400	Weak transcription	Small Intestine	intestine
5	chr11:102063800-102096600	Weak transcription	Stomach Mucosa	stomach
6	chr11:102064000-102094400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:102064000-102105400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:102066800-102078400	Weak transcription	A549	lung
9	chr11:102069000-102078400	Weak transcription	Fetal Brain Male	brain
10	chr11:102069000-102080200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:102069000-102088400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:102069200-102078400	Weak transcription	Fetal Kidney	kidney
13	chr11:102069200-102080800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:102069600-102078400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:102071400-102094400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:102071600-102079400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:102073400-102084200	Strong transcription	Fetal Lung	lung
18	chr11:102073800-102078400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:102073800-102078600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:102074000-102081000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:102074000-102097000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:102074000-102104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:102075200-102091400	Weak transcription	Aorta	Aorta
24	chr11:102075400-102105600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:102075600-102085000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:102075600-102085000	Weak transcription	Fetal Heart	heart
27	chr11:102075800-102079600	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:102076000-102080000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:102076000-102081200	Strong transcription	NHLF	lung
30	chr11:102076200-102081600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:102076200-102084600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:102076200-102085200	Strong transcription	HSMM	muscle
33	chr11:102076200-102091000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:102076200-102102200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:102076400-102081200	Strong transcription	NHEK	skin
36	chr11:102076400-102083200	Strong transcription	Hela-S3	cervix
37	chr11:102076400-102083800	Strong transcription	HepG2	liver
38	chr11:102076400-102086600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:102076600-102077600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr11:102076600-102078400	Strong transcription	Fetal Intestine Small	intestine
41	chr11:102076600-102078600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:102076600-102078800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:102076600-102078800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:102076600-102079000	Strong transcription	Left Ventricle	heart
45	chr11:102076600-102080400	Strong transcription	Adipose Nuclei	Adipose
46	chr11:102076600-102080800	Strong transcription	HSMMtube	muscle
47	chr11:102076600-102081400	Strong transcription	NH-A	brain
48	chr11:102076600-102081400	Strong transcription	NHDF-Ad	bronchial
49	chr11:102076600-102081800	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:102076600-102083400	Strong transcription	HMEC	breast

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