Variant report

Variant	rs73584410
Chromosome Location	chr10:3988285-3988286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3987220..3989447-chr10:3991646..3993576,2	K562	blood:
2	chr10:3985769..3988487-chr10:3989989..3992025,2	K562	blood:
3	chr10:3827664..3829812-chr10:3985989..3988957,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PFKP-16	chr10:3988245-3988667	XLOC_008357

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12264571	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28628206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582494	0.83[AMR][1000 genomes]
rs7899663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv24718	chr10:3987604-3991658	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3977400-3988400	Weak transcription	Left Ventricle	heart
2	chr10:3979000-3994400	Weak transcription	Stomach Mucosa	stomach
3	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:3984200-3990000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr10:3985000-3990800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:3985000-3994200	Weak transcription	Gastric	stomach
7	chr10:3985600-3991000	Weak transcription	HUVEC	blood vessel
8	chr10:3985600-3991400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:3985800-3992800	Enhancers	Dnd41	blood
10	chr10:3986000-3997600	Weak transcription	Right Atrium	heart
11	chr10:3986200-3990600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:3986200-3992000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:3986600-3991000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:3986800-3989200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:3987200-3989400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr10:3987200-3993800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:3987400-3989000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:3987600-3988400	Weak transcription	Placenta	Placenta
19	chr10:3987800-3988800	Enhancers	Colon Smooth Muscle	Colon
20	chr10:3987800-3988800	Enhancers	Fetal Muscle Leg	muscle
21	chr10:3987800-3989000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr10:3987800-3989400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr10:3987800-3993600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:3987800-3993800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:3987800-3993800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:3988000-3988400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr10:3988000-3988400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr10:3988000-3988600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr10:3988000-3988600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:3988000-3988600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:3988000-3988600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:3988000-3988600	Enhancers	Fetal Lung	lung
33	chr10:3988000-3988600	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:3988000-3988600	Enhancers	NHLF	lung
35	chr10:3988000-3988800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:3988000-3988800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr10:3988000-3988800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:3988000-3988800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:3988000-3988800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:3988000-3988800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:3988000-3988800	Enhancers	Primary T cells from cord blood	blood
42	chr10:3988000-3988800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr10:3988000-3988800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:3988000-3988800	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr10:3988000-3988800	Enhancers	Fetal Heart	heart
46	chr10:3988000-3988800	Enhancers	Fetal Intestine Small	intestine
47	chr10:3988000-3988800	Enhancers	Fetal Thymus	thymus
48	chr10:3988000-3988800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:3988000-3988800	Enhancers	HMEC	breast
50	chr10:3988000-3988800	Enhancers	NH-A	brain

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