Variant report

Variant	rs73585273
Chromosome Location	chr16:72346799-72346800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12103150	1.00[EUR][1000 genomes]
rs13339625	1.00[EUR][1000 genomes]
rs16970996	1.00[EUR][1000 genomes]
rs16971006	1.00[EUR][1000 genomes]
rs2840012	1.00[EUR][1000 genomes]
rs28459407	1.00[EUR][1000 genomes]
rs28514442	1.00[EUR][1000 genomes]
rs28568963	1.00[EUR][1000 genomes]
rs28569075	1.00[EUR][1000 genomes]
rs28616025	1.00[EUR][1000 genomes]
rs28882790	1.00[EUR][1000 genomes]
rs4624185	1.00[EUR][1000 genomes]
rs55777547	1.00[EUR][1000 genomes]
rs58363387	1.00[EUR][1000 genomes]
rs58591772	1.00[AMR][1000 genomes]
rs58819288	1.00[EUR][1000 genomes]
rs60052456	1.00[EUR][1000 genomes]
rs61398692	1.00[EUR][1000 genomes]
rs7184113	1.00[EUR][1000 genomes]
rs73578616	1.00[AMR][1000 genomes]
rs73578641	1.00[EUR][1000 genomes]
rs73582957	1.00[EUR][1000 genomes]
rs73582982	1.00[EUR][1000 genomes]
rs73583002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73585209	1.00[EUR][1000 genomes]
rs73585295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73599437	1.00[AMR][1000 genomes]
rs73599491	1.00[AMR][1000 genomes]
rs73601412	1.00[AMR][1000 genomes]
rs73601423	1.00[EUR][1000 genomes]
rs8045319	1.00[EUR][1000 genomes]
rs8050489	1.00[EUR][1000 genomes]
rs8051420	1.00[EUR][1000 genomes]
rs8057796	1.00[EUR][1000 genomes]
rs8059369	1.00[EUR][1000 genomes]
rs9928673	1.00[EUR][1000 genomes]
rs9932125	1.00[EUR][1000 genomes]
rs9934152	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1066473	chr16:72229094-72373598	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1063172	chr16:72342110-72537808	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv542947	chr16:72342110-72537808	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1067525	chr16:72342110-72602796	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv542948	chr16:72342110-72602796	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72315600-72353600	Weak transcription	Dnd41	blood
2	chr16:72340000-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:72343400-72353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:72344400-72347000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr16:72345400-72347200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:72345400-72359400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:72345600-72353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:72345800-72346800	Enhancers	Osteobl	bone
9	chr16:72346400-72346800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:72346400-72347000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:72346400-72347400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:72346400-72347400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:72346400-72347600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr16:72346600-72346800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr16:72346600-72346800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr16:72346600-72346800	Flanking Active TSS	NHDF-Ad	bronchial
17	chr16:72346600-72347000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:72346600-72347000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr16:72346600-72347000	Active TSS	Brain Angular Gyrus	brain
20	chr16:72346600-72347000	Active TSS	Brain Substantia Nigra	brain
21	chr16:72346600-72347000	Active TSS	Fetal Brain Male	brain
22	chr16:72346600-72347000	Active TSS	Fetal Brain Female	brain
23	chr16:72346600-72347200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr16:72346600-72347200	Active TSS	Brain Anterior Caudate	brain
25	chr16:72346600-72347400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:72346600-72347400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links