Variant report

Variant	rs73585492
Chromosome Location	chr13:89730589-89730590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs4132457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4573801	0.82[AMR][1000 genomes]
rs55661501	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55931359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56105607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60558572	0.85[AFR][1000 genomes]
rs7320386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7320663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7321416	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7325941	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7329725	0.82[AMR][1000 genomes]
rs7331975	0.82[AMR][1000 genomes]
rs7332112	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73579841	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73579843	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585437	0.85[AFR][1000 genomes]
rs73585443	0.85[AFR][1000 genomes]
rs73585445	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73587201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588288	0.82[AMR][1000 genomes]
rs73590225	0.82[AMR][1000 genomes]
rs73590246	0.91[AMR][1000 genomes]
rs73590290	0.91[AMR][1000 genomes]
rs73590296	0.91[AMR][1000 genomes]
rs73592133	1.00[AMR][1000 genomes]
rs73594035	1.00[AMR][1000 genomes]
rs73594053	1.00[AMR][1000 genomes]
rs73594054	1.00[AMR][1000 genomes]
rs74107514	0.81[ASN][1000 genomes]
rs7984249	0.82[AMR][1000 genomes]
rs7986157	0.91[AMR][1000 genomes]
rs7990594	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7997170	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2758339	chr13:89411081-89875974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759957	chr13:89411081-89875974	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv826739	chr13:89477707-89830601	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv34578	chr13:89515664-89822799	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757546	chr13:89539415-89864593	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv832674	chr13:89649146-89773584	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv821674	chr13:89712049-89780301	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv900844	chr13:89721607-89944833	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89730400-89730800	Enhancers	HUES48 Cell Line	embryonic stem cell

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