Variant report

Variant	rs73586030
Chromosome Location	chr14:21324281-21324282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:21304507..21305551-chr14:21323522..21324508,13	MCF-7	breast:
2	chr14:21307828..21309542-chr14:21323768..21326232,2	MCF-7	breast:
3	chr14:21314410..21316763-chr14:21323540..21325597,2	K562	blood:
4	chr14:21155907..21157723-chr14:21323708..21325549,2	MCF-7	breast:
5	chr14:21164738..21167054-chr14:21324271..21326741,2	MCF-7	breast:
6	chr14:21306953..21309140-chr14:21323464..21326358,2	K562	blood:
7	chr14:21165600..21167287-chr14:21323145..21324514,10	MCF-7	breast:
8	chr14:21304226..21305559-chr14:21323555..21324321,5	MCF-7	breast:
9	chr14:21225835..21226856-chr14:21323577..21324461,4	K562	blood:
10	chr14:21166775..21167518-chr14:21323866..21324554,2	MCF-7	breast:
11	chr14:21165305..21166567-chr14:21323518..21324499,14	K562	blood:
12	chr14:21165605..21166547-chr14:21323286..21324779,12	MCF-7	breast:
13	chr14:21302824..21303739-chr14:21323545..21324477,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258818	Chromatin interaction
ENSG00000214274	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10162377	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162378	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162520	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623018	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628228	0.82[EUR][1000 genomes]
rs17792439	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889770	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957334	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003699	0.95[EUR][1000 genomes]
rs983670	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21317200-21325800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:21317400-21326000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:21317800-21325800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:21318000-21325600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:21323200-21324400	Enhancers	A549	lung
6	chr14:21323400-21324400	Enhancers	Brain Hippocampus Middle	brain
7	chr14:21323600-21324400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:21323600-21324400	Enhancers	Spleen	Spleen
9	chr14:21323600-21324400	Enhancers	K562	blood
10	chr14:21323800-21324400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr14:21324000-21324400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:21324000-21325000	Weak transcription	Stomach Mucosa	stomach
13	chr14:21324000-21325400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:21324000-21325400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:21324000-21325600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:21324000-21325600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:21324000-21325600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:21324000-21325600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:21324000-21325600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr14:21324000-21325600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:21324000-21325800	Weak transcription	Liver	Liver
22	chr14:21324000-21325800	Weak transcription	Brain Angular Gyrus	brain
23	chr14:21324000-21325800	Weak transcription	Brain Anterior Caudate	brain
24	chr14:21324000-21325800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:21324000-21325800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:21324000-21325800	Weak transcription	Brain Substantia Nigra	brain
27	chr14:21324000-21325800	Weak transcription	Fetal Intestine Large	intestine
28	chr14:21324000-21325800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr14:21324000-21326000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:21324000-21326000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links