Variant report

Variant	rs7358625
Chromosome Location	chr12:104432609-104432610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12427086	0.94[ASN][1000 genomes]
rs1564892	0.91[ASN][1000 genomes]
rs17035153	0.93[ASN][1000 genomes]
rs2629751	0.88[ASN][1000 genomes]
rs2722170	0.88[ASN][1000 genomes]
rs2722175	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723867	0.88[ASN][1000 genomes]
rs55675238	0.87[ASN][1000 genomes]
rs55997300	0.87[ASN][1000 genomes]
rs56269347	0.90[ASN][1000 genomes]
rs57041861	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv427922	chr12:104325583-104523096	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104408800-104442200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:104415200-104435200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:104420000-104435200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:104421200-104435200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:104424800-104438800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:104428000-104434200	Weak transcription	Fetal Stomach	stomach
7	chr12:104428400-104439000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:104429200-104438400	Weak transcription	Colon Smooth Muscle	Colon
9	chr12:104429600-104438800	Weak transcription	Ovary	ovary
10	chr12:104432600-104435600	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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