Variant report

Variant	rs73587068
Chromosome Location	chr16:79629908-79629909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73587063	0.82[AFR][1000 genomes]
rs73587069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv457554	chr16:79608408-79645989	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv573289	chr16:79608408-79645989	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv827768	chr16:79615278-79640094	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv827769	chr16:79628439-79631347	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79622200-79631400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:79624800-79630000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:79624800-79630800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr16:79624800-79631400	Weak transcription	Esophagus	oesophagus
5	chr16:79624800-79632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:79625800-79636800	Active TSS	Psoas Muscle	Psoas
7	chr16:79626400-79631800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:79626600-79632400	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr16:79626800-79636400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr16:79627200-79633000	Transcr. at gene 5' and 3'	Fetal Lung	lung
11	chr16:79627200-79635600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
12	chr16:79627400-79632600	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr16:79627800-79630000	Weak transcription	Small Intestine	intestine
14	chr16:79628000-79632600	Active TSS	Placenta	Placenta
15	chr16:79628000-79636200	Active TSS	NHDF-Ad	bronchial
16	chr16:79628400-79636200	Active TSS	Brain Cingulate Gyrus	brain
17	chr16:79628600-79630000	Bivalent/Poised TSS	Fetal Brain Female	brain
18	chr16:79628600-79630200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr16:79628600-79631000	Active TSS	Brain Germinal Matrix	brain
20	chr16:79628600-79631200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:79628600-79632400	Active TSS	Fetal Intestine Small	intestine
22	chr16:79628600-79633400	Active TSS	Right Atrium	heart
23	chr16:79628600-79636400	Active TSS	Brain Anterior Caudate	brain
24	chr16:79628800-79630600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr16:79628800-79632400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr16:79628800-79636200	Active TSS	Colon Smooth Muscle	Colon
27	chr16:79628800-79636200	Active TSS	Stomach Smooth Muscle	stomach
28	chr16:79628800-79637000	Active TSS	Brain Substantia Nigra	brain
29	chr16:79629000-79630000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr16:79629000-79630000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr16:79629000-79630000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:79629000-79630000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr16:79629000-79630400	Flanking Active TSS	NHEK	skin
34	chr16:79629000-79630600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr16:79629000-79630800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr16:79629000-79631200	Flanking Active TSS	Liver	Liver
37	chr16:79629000-79632600	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr16:79629000-79635200	Active TSS	Rectal Smooth Muscle	rectum
39	chr16:79629000-79636200	Active TSS	Ovary	ovary
40	chr16:79629000-79636400	Active TSS	Brain Angular Gyrus	brain
41	chr16:79629000-79636400	Active TSS	NHLF	lung
42	chr16:79629000-79636800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr16:79629200-79630000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr16:79629200-79630200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr16:79629200-79630200	Enhancers	Aorta	Aorta
46	chr16:79629200-79630200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
47	chr16:79629200-79630200	Flanking Active TSS	HMEC	breast
48	chr16:79629200-79630400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr16:79629200-79631000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr16:79629200-79632400	Active TSS	Fetal Stomach	stomach

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