Variant report

Variant	rs73588656
Chromosome Location	chr11:102557576-102557577
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11500949	0.87[AFR][1000 genomes]
rs12280145	0.92[AFR][1000 genomes]
rs12293213	0.87[AFR][1000 genomes]
rs13377379	0.87[AFR][1000 genomes]
rs1940042	0.87[AFR][1000 genomes]
rs1940043	0.92[AFR][1000 genomes]
rs4568969	0.87[AFR][1000 genomes]
rs7111125	0.87[AFR][1000 genomes]
rs73588646	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102555600-102557600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:102555600-102558200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:102556000-102558200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:102556000-102558400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:102556600-102558400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:102556600-102558600	Enhancers	Stomach Mucosa	stomach
7	chr11:102556800-102558200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:102556800-102558200	Enhancers	NHEK	skin
9	chr11:102557200-102557600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:102557400-102558200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:102557400-102558200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links