Variant report

Variant	rs73589289
Chromosome Location	chr8:54875447-54875448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:54864473..54868508-chr8:54874228..54876255,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10095679	0.89[AFR][1000 genomes]
rs10101967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10504160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16919753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28374410	1.00[AMR][1000 genomes]
rs28431894	0.81[AFR][1000 genomes]
rs28437156	1.00[AMR][1000 genomes]
rs28452332	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489512	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28575670	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698373	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28813536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56894994	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73590837	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592909	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2758160	chr8:54832990-55016965	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759617	chr8:54832990-55016965	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv427821	chr8:54832990-55016965	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54856400-54889400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:54858200-54879000	Weak transcription	Right Atrium	heart
3	chr8:54859600-54881200	Weak transcription	Hela-S3	cervix
4	chr8:54859600-54885400	Weak transcription	K562	blood
5	chr8:54862000-54879200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:54862200-54879200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:54866600-54893600	Weak transcription	Fetal Kidney	kidney
8	chr8:54866800-54885200	Weak transcription	NH-A	brain
9	chr8:54866800-54898000	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:54866800-54898200	Weak transcription	Fetal Heart	heart
11	chr8:54867000-54875600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:54867000-54884800	Weak transcription	HUVEC	blood vessel
13	chr8:54867600-54876000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:54867600-54877400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:54867800-54876600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:54868200-54895600	Weak transcription	Brain Angular Gyrus	brain
17	chr8:54870400-54875600	Weak transcription	HepG2	liver
18	chr8:54870400-54875600	Weak transcription	HMEC	breast
19	chr8:54870600-54879400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:54870800-54879200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:54871000-54878000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:54871000-54879200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:54871400-54891000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr8:54871400-54898000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:54871600-54877400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:54871600-54932600	Weak transcription	Fetal Brain Male	brain
27	chr8:54871800-54879200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:54871800-54880800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:54872000-54876000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:54872000-54879000	Strong transcription	Liver	Liver
31	chr8:54872000-54892400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:54872200-54876600	Strong transcription	Primary T cells from cord blood	blood
33	chr8:54872200-54879000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:54872200-54879200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:54872200-54881000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr8:54872400-54876800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:54872600-54875800	Strong transcription	GM12878-XiMat	blood
38	chr8:54872600-54876400	Strong transcription	HSMMtube	muscle
39	chr8:54872600-54877000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr8:54872600-54879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:54872800-54879200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:54872800-54898200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr8:54873000-54895600	Weak transcription	Colonic Mucosa	Colon
44	chr8:54873200-54876000	Strong transcription	Dnd41	blood
45	chr8:54873200-54876600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:54873400-54893600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr8:54873600-54875600	Weak transcription	NHDF-Ad	bronchial
48	chr8:54873600-54877400	Weak transcription	Fetal Intestine Large	intestine
49	chr8:54873600-54877600	Weak transcription	Left Ventricle	heart
50	chr8:54873600-54894600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links