Variant report
| Variant | rs73591377 |
|---|---|
| Chromosome Location | chr6:128906564-128906565 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr6:128906374-128906567 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| EEF1DP5 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs56664357 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs57514583 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs57614365 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs59976912 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60241124 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73589596 | 0.83[AMR][1000 genomes] |
| rs73591312 | 0.97[AFR][1000 genomes] |
| rs73591318 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73591322 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73591329 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73591346 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73591361 | 0.97[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73591366 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7738248 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7756825 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020071 | chr6:128579774-129048919 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv538441 | chr6:128579774-129048919 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv830801 | chr6:128878436-129064667 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:128905400-128916000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
