Variant report

Variant	rs73591608
Chromosome Location	chr14:25277133-25277134
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28486054	1.00[AMR][1000 genomes]
rs60597460	0.80[AFR][1000 genomes]
rs7140772	0.80[AFR][1000 genomes]
rs73591610	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591637	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv525203	chr14:25270335-25282967	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25272400-25283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:25273400-25277600	Enhancers	Fetal Intestine Small	intestine
3	chr14:25273400-25277600	Weak transcription	Pancreas	Pancrea
4	chr14:25273400-25278200	Enhancers	Fetal Intestine Large	intestine
5	chr14:25274000-25283000	Weak transcription	Gastric	stomach
6	chr14:25275000-25279400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:25275200-25285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:25275400-25277200	Enhancers	Liver	Liver
9	chr14:25275400-25278200	Weak transcription	HSMMtube	muscle
10	chr14:25275400-25278400	Enhancers	Right Ventricle	heart
11	chr14:25275400-25285000	Weak transcription	Lung	lung
12	chr14:25275600-25279400	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:25275600-25279600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:25275800-25279200	Weak transcription	Fetal Kidney	kidney
15	chr14:25276000-25278200	Weak transcription	Stomach Mucosa	stomach
16	chr14:25276000-25279400	Weak transcription	Brain Substantia Nigra	brain
17	chr14:25276000-25279400	Weak transcription	Small Intestine	intestine
18	chr14:25276000-25280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr14:25276000-25281400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:25276200-25277200	Weak transcription	Fetal Lung	lung
21	chr14:25276200-25277800	Weak transcription	HepG2	liver
22	chr14:25276200-25278400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:25276200-25279600	Weak transcription	Brain Anterior Caudate	brain
24	chr14:25276200-25279600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:25276200-25282000	Weak transcription	Fetal Brain Female	brain
26	chr14:25276200-25285400	Weak transcription	Adipose Nuclei	Adipose
27	chr14:25276200-25286600	Weak transcription	Colon Smooth Muscle	Colon
28	chr14:25276600-25277600	Weak transcription	Left Ventricle	heart
29	chr14:25276600-25279400	Weak transcription	Fetal Heart	heart
30	chr14:25276600-25284800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr14:25276800-25284800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:25277000-25277600	Enhancers	Duodenum Mucosa	Duodenum

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