Variant report

Variant	rs73591683
Chromosome Location	chr14:25357885-25357886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73589759	1.00[AMR][1000 genomes]
rs73589763	1.00[AMR][1000 genomes]
rs73591661	1.00[AMR][1000 genomes]
rs8016803	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25346000-25358000	Weak transcription	Fetal Intestine Small	intestine
2	chr14:25349200-25361800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:25350600-25364600	Weak transcription	NHDF-Ad	bronchial
4	chr14:25351200-25361600	Weak transcription	Fetal Heart	heart
5	chr14:25351200-25361800	Weak transcription	Right Atrium	heart
6	chr14:25351200-25363800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:25353600-25358600	Enhancers	HepG2	liver
8	chr14:25355000-25360000	Weak transcription	Gastric	stomach
9	chr14:25355200-25359200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:25355400-25358000	Weak transcription	Fetal Intestine Large	intestine
11	chr14:25356800-25358200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:25356800-25358400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:25356800-25359000	Weak transcription	Fetal Lung	lung
14	chr14:25357000-25358400	Enhancers	Left Ventricle	heart
15	chr14:25357200-25358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:25357400-25358200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr14:25357400-25358200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr14:25357600-25359000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:25357800-25358200	Weak transcription	HSMM	muscle
20	chr14:25357800-25361800	Weak transcription	Pancreas	Pancrea
21	chr14:25357800-25361800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links