Variant report

Variant	rs73592804
Chromosome Location	chr6:148968447-148968448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59816307	1.00[AMR][1000 genomes]
rs60575221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600837	1.00[AMR][1000 genomes]
rs73600845	1.00[AMR][1000 genomes]
rs73600854	1.00[AMR][1000 genomes]
rs73600855	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5530	chr6:148954051-148998924	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:148965600-148968800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:148966200-148973000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:148966600-148969600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:148966800-148969400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:148967200-148973200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:148967400-148969000	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links