Variant report

Variant	rs73594359
Chromosome Location	chr10:26726376-26726377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:26726363-26727139	GM12878	blood:	n/a	chr10:26726541-26726554 chr10:26726543-26726554 chr10:26726543-26726554
2	POLR2A	chr10:26726364-26728269	HL-60	blood:	n/a	n/a
3	BCLAF1	chr10:26726343-26728234	GM12878	blood:	n/a	n/a
4	RUNX3	chr10:26726297-26727893	GM12878	blood:	n/a	n/a
5	FOXM1	chr10:26726345-26727837	GM12878	blood:	n/a	n/a
6	CHD2	chr10:26726290-26728235	GM12878	blood:	n/a	n/a
7	TBL1XR1	chr10:26726330-26728259	GM12878	blood:	n/a	n/a
8	POLR2A	chr10:26726353-26729020	GM18951	blood:	n/a	n/a
9	MYC	chr10:26726294-26726494	MCF10A-Er-Src	breast:	n/a	n/a
10	MXI1	chr10:26726334-26729345	GM12878	blood:	n/a	n/a
11	ATF2	chr10:26726289-26727887	GM12878	blood:	n/a	n/a
12	MTA3	chr10:26726315-26727839	GM12878	blood:	n/a	n/a
13	MTA3	chr10:26726221-26728606	GM12878	blood:	n/a	n/a
14	POLR2A	chr10:26726376-26729067	Raji	blood:	n/a	n/a
15	POLR2A	chr10:26725918-26729477	GM12891	blood:	n/a	n/a
16	NFYB	chr10:26726311-26726876	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
APBB1IP	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16926975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16927025	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594357	1.00[AMR][1000 genomes]
rs73594360	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26718400-26726400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26721000-26726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26722600-26726600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:26722600-26726600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:26722800-26726600	Weak transcription	Osteobl	bone
6	chr10:26723800-26727000	Weak transcription	Spleen	Spleen
7	chr10:26724000-26726400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:26724400-26726400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:26724400-26726400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:26724400-26726400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:26724400-26726400	Enhancers	Liver	Liver
12	chr10:26724400-26726600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:26724600-26726400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:26724600-26726600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:26724800-26726400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:26724800-26726600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:26725000-26726400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:26725000-26726400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:26725200-26726400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr10:26725200-26727000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr10:26725600-26726600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:26725600-26730400	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr10:26725800-26726600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:26726000-26726400	Enhancers	Duodenum Mucosa	Duodenum
25	chr10:26726000-26726400	Flanking Active TSS	Fetal Thymus	thymus
26	chr10:26726000-26726400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr10:26726000-26726400	Flanking Active TSS	GM12878-XiMat	blood
28	chr10:26726000-26726600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:26726000-26726600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:26726000-26726600	Enhancers	Adipose Nuclei	Adipose
31	chr10:26726000-26727200	Flanking Active TSS	Dnd41	blood
32	chr10:26726000-26728000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr10:26726000-26729400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:26726000-26730200	Active TSS	Thymus	Thymus
35	chr10:26726000-26730800	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr10:26726200-26727200	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr10:26726200-26727200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr10:26726200-26728000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:26726200-26730200	Active TSS	Primary T helper cells PMA-I stimulated	--

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