Variant report

Variant	rs73594366
Chromosome Location	chr10:26825218-26825219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55803231	1.00[AMR][1000 genomes]
rs56303834	1.00[AMR][1000 genomes]
rs57076270	1.00[AMR][1000 genomes]
rs60389774	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv523178	chr10:26823045-26828889	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26780200-26834000	Strong transcription	Dnd41	blood
2	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26780800-26827000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
6	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:26809200-26826600	Strong transcription	Liver	Liver
9	chr10:26809200-26831800	Weak transcription	Lung	lung
10	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
11	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:26809400-26827200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:26809400-26828200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:26813600-26827000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:26813800-26837800	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:26814400-26832600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:26814800-26826800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:26814800-26837000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:26815600-26832800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:26816200-26826000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:26817800-26828800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:26818600-26832800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:26819600-26837000	Weak transcription	Right Atrium	heart
24	chr10:26820600-26826800	Strong transcription	GM12878-XiMat	blood
25	chr10:26820600-26827200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:26820600-26833000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:26820600-26834400	Strong transcription	Thymus	Thymus
28	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
29	chr10:26820800-26825400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:26820800-26826600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:26820800-26826600	Strong transcription	Primary hematopoietic stem cells	blood
32	chr10:26820800-26826600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:26823200-26826800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:26823800-26826000	Weak transcription	Primary T cells from cord blood	blood
35	chr10:26823800-26826000	Weak transcription	Adipose Nuclei	Adipose
36	chr10:26823800-26826200	Weak transcription	Spleen	Spleen
37	chr10:26823800-26840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:26824400-26826800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:26824400-26828000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:26824600-26826800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:26824800-26825400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:26824800-26827000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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