Variant report

Variant	rs73595085
Chromosome Location	chr6:161650801-161650802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161643766..161646646-chr6:161649378..161651893,2	K562	blood:
2	chr6:161646694..161648332-chr6:161648631..161651457,2	MCF-7	breast:
3	chr6:161646998..161649019-chr6:161649045..161652363,4	K562	blood:
4	chr6:161636514..161639270-chr6:161649424..161651598,2	MCF-7	breast:
5	chr6:161650432..161652504-chr6:161681680..161683912,2	K562	blood:
6	chr6:161643850..161652009-chr6:161690298..161699013,9	K562	blood:
7	chr6:161625007..161627754-chr6:161650672..161652327,2	K562	blood:

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13437215	1.00[AFR][1000 genomes]
rs9458147	1.00[AFR][1000 genomes]
rs9458159	1.00[AFR][1000 genomes]
rs9458160	1.00[AFR][1000 genomes]
rs9458170	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
6	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:161644400-161655000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:161644600-161651800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:161646000-161653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:161646600-161651000	Enhancers	Placenta	Placenta
11	chr6:161646600-161651000	Enhancers	Left Ventricle	heart
12	chr6:161647200-161663200	Weak transcription	Thymus	Thymus
13	chr6:161647400-161651000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:161647800-161651000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:161648000-161654000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:161648000-161656800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:161648000-161660600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:161648400-161653800	Strong transcription	Primary B cells from cord blood	blood
19	chr6:161648800-161651000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:161648800-161656800	Weak transcription	Right Ventricle	heart
21	chr6:161649000-161651000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:161649000-161651000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr6:161649000-161651000	Enhancers	Fetal Brain Male	brain
24	chr6:161649200-161651000	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr6:161649200-161655000	Weak transcription	HMEC	breast
26	chr6:161649400-161651000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:161649400-161651000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:161649400-161651600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:161649400-161651600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:161649400-161657400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:161649400-161662800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
33	chr6:161649800-161651000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:161649800-161651000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:161649800-161651000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:161649800-161651000	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr6:161649800-161651000	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr6:161649800-161651000	Enhancers	Fetal Kidney	kidney
39	chr6:161649800-161651000	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr6:161649800-161651000	Flanking Active TSS	HUVEC	blood vessel
41	chr6:161649800-161651000	Flanking Active TSS	K562	blood
42	chr6:161649800-161651000	Flanking Active TSS	NHDF-Ad	bronchial
43	chr6:161649800-161651400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:161649800-161651400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr6:161649800-161652000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:161650000-161651000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:161650000-161651000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:161650000-161651000	Enhancers	Fetal Intestine Large	intestine
49	chr6:161650000-161651000	Enhancers	Ovary	ovary
50	chr6:161650000-161651200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links