Variant report

Variant	rs73595618
Chromosome Location	chr16:52350642-52350643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1362426	1.00[AMR][1000 genomes]
rs16950931	1.00[AMR][1000 genomes]
rs3095554	1.00[AMR][1000 genomes]
rs3095560	1.00[AMR][1000 genomes]
rs73593680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1066719	chr16:52294981-53141905	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv827651	chr16:52304029-52373509	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52344200-52351800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:52344400-52352200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr16:52344600-52351800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr16:52345000-52351200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr16:52345000-52352400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr16:52349800-52350800	Enhancers	Fetal Intestine Large	intestine
7	chr16:52349800-52351000	Enhancers	Fetal Intestine Small	intestine
8	chr16:52350000-52350800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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