Variant report

Variant	rs73598088
Chromosome Location	chr6:149446485-149446486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73598083	1.00[AFR][1000 genomes]
rs73598093	1.00[AFR][1000 genomes]
rs73600006	0.89[AFR][1000 genomes]
rs73600009	1.00[AFR][1000 genomes]
rs73600012	1.00[AFR][1000 genomes]
rs73600013	0.90[AFR][1000 genomes]
rs73602076	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149442400-149448400	Weak transcription	K562	blood
2	chr6:149442600-149448200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:149443200-149447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:149444400-149447800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:149444800-149446800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:149444800-149447600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:149444800-149448400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:149445000-149448200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:149445200-149447600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:149445200-149447600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:149445400-149448800	Weak transcription	Primary T cells from cord blood	blood
12	chr6:149445400-149449400	Weak transcription	GM12878-XiMat	blood
13	chr6:149445600-149447600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:149445600-149447600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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