Variant report

Variant	rs73598485
Chromosome Location	chr6:160559923-160559924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:160559129..160560035-chr6:160876676..160877443,6	MCF-7	breast:
2	chr6:160558415..160560977-chr6:160562640..160565543,2	K562	blood:
3	chr6:160559166..160560422-chr6:160876706..160877623,9	K562	blood:
4	chr6:160284069..160284978-chr6:160559385..160560056,2	K562	blood:
5	chr6:160519823..160522664-chr6:160558781..160560789,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3798170	0.86[AFR][1000 genomes]
rs73598488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv533582	chr6:160554084-160579554	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv33283	chr6:160557317-160560903	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160539400-160580400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:160539600-160574600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:160540200-160576200	Weak transcription	Right Ventricle	heart
4	chr6:160540400-160568800	Weak transcription	Esophagus	oesophagus
5	chr6:160543200-160561400	Weak transcription	Right Atrium	heart
6	chr6:160546400-160560200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:160548200-160560000	Weak transcription	Aorta	Aorta
8	chr6:160554800-160582800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:160555400-160560200	Enhancers	Fetal Intestine Large	intestine
10	chr6:160558400-160563800	Enhancers	A549	lung
11	chr6:160558600-160560000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:160558600-160560200	Weak transcription	Spleen	Spleen
13	chr6:160558800-160560400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:160558800-160560400	Enhancers	Ovary	ovary
15	chr6:160558800-160560600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:160559000-160560000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:160559000-160560400	Enhancers	Fetal Heart	heart
18	chr6:160559000-160560400	Enhancers	Fetal Muscle Leg	muscle
19	chr6:160559000-160561000	Enhancers	Liver	Liver
20	chr6:160559000-160561000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:160559000-160562000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:160559000-160573000	Weak transcription	Left Ventricle	heart
23	chr6:160559200-160560000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:160559200-160560200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:160559200-160560200	Enhancers	NH-A	brain
26	chr6:160559200-160560400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:160559200-160561200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:160559200-160564600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:160559200-160581600	Weak transcription	Gastric	stomach
30	chr6:160559200-160581600	Weak transcription	Pancreas	Pancrea
31	chr6:160559400-160560000	Enhancers	Brain Hippocampus Middle	brain
32	chr6:160559400-160560200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr6:160559400-160560600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:160559400-160560600	Enhancers	HSMMtube	muscle
35	chr6:160559400-160560800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:160559400-160561000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:160559400-160561000	Enhancers	NHEK	skin
38	chr6:160559400-160561200	Enhancers	NHDF-Ad	bronchial
39	chr6:160559400-160561200	Enhancers	Osteobl	bone
40	chr6:160559400-160562000	Enhancers	Muscle Satellite Cultured Cells	--
41	chr6:160559400-160563000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:160559400-160563400	Enhancers	Colon Smooth Muscle	Colon
43	chr6:160559400-160563400	Enhancers	HepG2	liver
44	chr6:160559400-160563800	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:160559600-160560600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr6:160559600-160560600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:160559600-160560600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:160559600-160560600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:160559600-160560600	Enhancers	HSMM	muscle
50	chr6:160559600-160560600	Enhancers	NHLF	lung

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