Variant report

Variant	rs73598538
Chromosome Location	chr10:22772267-22772268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73598537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73598539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73598544	1.00[AFR][1000 genomes]
rs73598545	0.83[AFR][1000 genomes]
rs73598546	0.83[AFR][1000 genomes]
rs73598547	0.83[AFR][1000 genomes]
rs74123070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982870	chr10:22770802-22778774	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22765800-22806600	Weak transcription	Right Atrium	heart
2	chr10:22771000-22780200	Weak transcription	Brain Angular Gyrus	brain
3	chr10:22771200-22772800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:22771400-22775600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:22771600-22775200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:22771600-22779800	Weak transcription	Brain Substantia Nigra	brain
7	chr10:22771800-22775200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:22771800-22778400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:22772000-22772400	Weak transcription	Stomach Mucosa	stomach
10	chr10:22772000-22772800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:22772200-22772400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr10:22772200-22772600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:22772200-22772600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:22772200-22772600	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:22772200-22772800	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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