Variant report

Variant	rs73598755
Chromosome Location	chr14:24398905-24398906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24398617..24399598-chr14:24423083..24423873,6	MCF-7	breast:
2	chr14:24058050..24058833-chr14:24398622..24399610,3	K562	blood:
3	chr14:24398247..24400471-chr14:24419661..24421717,2	MCF-7	breast:
4	chr14:24394920..24396985-chr14:24397775..24399621,2	MCF-7	breast:
5	chr14:24393890..24395903-chr14:24398328..24399829,2	MCF-7	breast:
6	chr14:24134252..24134887-chr14:24398848..24399689,2	MCF-7	breast:
7	chr14:24057910..24059168-chr14:24398455..24399643,7	MCF-7	breast:
8	chr14:24196484..24197434-chr14:24398709..24399632,4	K562	blood:
9	chr14:24134707..24136516-chr14:24397576..24400257,2	MCF-7	breast:
10	chr14:24037673..24038583-chr14:24398688..24399458,3	MCF-7	breast:
11	chr14:24135080..24135748-chr14:24398753..24399328,3	MCF-7	breast:
12	chr14:24393470..24395178-chr14:24396859..24399193,2	K562	blood:
13	chr14:24100804..24101526-chr14:24398701..24399561,2	MCF-7	breast:
14	chr14:24100396..24102726-chr14:24397170..24399174,2	MCF-7	breast:
15	chr14:24379532..24380450-chr14:24398433..24399596,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10483284	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17099223	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099230	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099242	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58328116	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598744	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598751	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598756	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598757	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73598759	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003537	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8005368	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005541	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019962	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020121	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73598755	DHRS4L2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24395600-24401400	Weak transcription	Fetal Kidney	kidney
2	chr14:24397800-24400400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:24398000-24399600	Enhancers	Brain Germinal Matrix	brain
4	chr14:24398400-24403000	Enhancers	Fetal Intestine Small	intestine
5	chr14:24398600-24399000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:24398600-24399000	Active TSS	Brain Angular Gyrus	brain
7	chr14:24398600-24399200	Enhancers	Fetal Brain Male	brain
8	chr14:24398600-24399600	Enhancers	Brain Hippocampus Middle	brain
9	chr14:24398600-24400600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr14:24398600-24400600	Enhancers	Ovary	ovary
11	chr14:24398600-24400800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:24398800-24399000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr14:24398800-24399200	Active TSS	Brain Anterior Caudate	brain
14	chr14:24398800-24400600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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