Variant report

Variant	rs73600538
Chromosome Location	chr10:23131248-23131249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16922705	1.00[EUR][1000 genomes]
rs58347897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600540	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73600556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73600584	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23122600-23131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
3	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:23129000-23133800	Weak transcription	Aorta	Aorta
6	chr10:23131000-23131600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:23131000-23131600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:23131000-23131600	Enhancers	Brain Substantia Nigra	brain
9	chr10:23131000-23131800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:23131200-23131400	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:23131200-23131800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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