Variant report

Variant	rs73600560
Chromosome Location	chr10:23183299-23183300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12240744	1.00[AMR][1000 genomes]
rs12262524	1.00[AMR][1000 genomes]
rs16922685	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23181600-23185000	Weak transcription	Gastric	stomach
2	chr10:23182200-23184400	Enhancers	Fetal Intestine Small	intestine
3	chr10:23182200-23184600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23182200-23184600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23182400-23183600	Enhancers	Fetal Intestine Large	intestine
6	chr10:23182600-23184400	Enhancers	Brain Hippocampus Middle	brain
7	chr10:23182800-23184600	Enhancers	K562	blood
8	chr10:23183000-23184000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:23183000-23184400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:23183200-23184000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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