Variant report

Variant	rs73603363
Chromosome Location	chr10:4722612-4722613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4721349..4725146-chr10:4726234..4729626,7	MCF-7	breast:
2	chr10:4720656..4723151-chr10:4723485..4725231,3	MCF-7	breast:
3	chr10:4720784..4722788-chr10:4723962..4726842,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs6601856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080362	1.00[AFR][1000 genomes]
rs73585603	1.00[AMR][1000 genomes]
rs73585605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585607	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603357	1.00[AMR][1000 genomes]
rs73603358	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603359	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603365	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603369	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603370	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603372	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603373	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915596	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4716400-4726600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:4717800-4727000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:4720800-4722800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4721000-4725800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:4721000-4727800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:4721200-4725800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4721200-4728400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:4721200-4729000	Weak transcription	NHDF-Ad	bronchial
9	chr10:4721200-4733600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:4721400-4726000	Weak transcription	NHEK	skin
11	chr10:4721400-4726000	Weak transcription	Osteobl	bone
12	chr10:4721400-4727000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:4721600-4727200	Weak transcription	HUVEC	blood vessel
14	chr10:4721800-4725800	Weak transcription	HMEC	breast
15	chr10:4721800-4726000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:4721800-4726400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:4721800-4726600	Weak transcription	NH-A	brain
18	chr10:4721800-4727200	Weak transcription	Psoas Muscle	Psoas
19	chr10:4722400-4722800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:4722600-4724200	Weak transcription	Stomach Mucosa	stomach
21	chr10:4722600-4725600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links