Variant report

Variant	rs73604011
Chromosome Location	chr10:27793407-27793408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27792790-27793456	HUVEC	blood vessel:	n/a	n/a
2	NRF1	chr10:27792778-27793431	GM12878	blood:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793061-27793072 chr10:27793214-27793223
3	YY1	chr10:27792899-27793494	GM12892	blood:	n/a	n/a
4	POLR2A	chr10:27792739-27793726	GM12891	blood:	n/a	n/a
5	CTCF	chr10:27793340-27793490	GM12875	blood:	n/a	n/a
6	YY1	chr10:27792915-27793442	ECC-1	luminal epithelium:	n/a	n/a
7	YY1	chr10:27793033-27793524	K562	blood:	n/a	n/a
8	MAX	chr10:27792778-27793567	MCF-7	breast:	n/a	n/a
9	TAF1	chr10:27792756-27793409	GM12878	blood:	n/a	n/a
10	HA-E2F1	chr10:27792861-27793675	MCF-7	breast:	n/a	chr10:27793215-27793224 chr10:27793062-27793071
11	POLR2A	chr10:27792737-27793495	MCF10A-Er-Src	breast:	n/a	n/a
12	IRF4	chr10:27792772-27793441	GM12878	blood:	n/a	n/a
13	POLR2A	chr10:27792786-27793550	HUVEC	blood vessel:	n/a	n/a
14	TRIM28	chr10:27792688-27793442	K562	blood:	n/a	n/a
15	POLR2A	chr10:27792742-27793781	ProgFib	skin:	n/a	n/a
16	POLR2A	chr10:27792614-27793956	H1-hESC	embryonic stem cell:	n/a	n/a
17	RELA	chr10:27792471-27793482	GM15510	blood:	n/a	n/a
18	TAF1	chr10:27792736-27793664	MCF-7	breast:	n/a	n/a
19	POU2F2	chr10:27792869-27793492	GM12878	blood:	n/a	n/a
20	POLR2A	chr10:27792627-27793625	GM12878	blood:	n/a	n/a
21	MYBL2	chr10:27792707-27793580	HepG2	liver:	n/a	n/a
22	JUND	chr10:27792843-27793475	A549	lung:	n/a	n/a
23	TBP	chr10:27792657-27793662	K562	blood:	n/a	n/a
24	HEY1	chr10:27792883-27793667	HepG2	liver:	n/a	chr10:27792998-27793013 chr10:27793508-27793523
25	ELF1	chr10:27792796-27793592	MCF-7	breast:	n/a	chr10:27793473-27793485
26	CTCF	chr10:27793115-27793611	GM12892	blood:	n/a	n/a
27	BCLAF1	chr10:27792827-27793409	K562	blood:	n/a	chr10:27793004-27793013
28	POLR2A	chr10:27792812-27793550	HepG2	liver:	n/a	n/a
29	POLR2A	chr10:27792828-27793494	Hela-S3	cervix:	n/a	n/a
30	GABPA	chr10:27792885-27793431	GM12878	blood:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
31	GABPA	chr10:27792734-27793492	MCF-7	breast:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
32	ETS1	chr10:27792994-27793472	GM12878	blood:	n/a	n/a
33	GABPA	chr10:27792776-27793422	A549	lung:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
34	TCF3	chr10:27792590-27793540	GM12878	blood:	n/a	n/a
35	RCOR1	chr10:27792614-27793491	K562	blood:	n/a	n/a
36	POLR2A	chr10:27793058-27793431	GM12891	blood:	n/a	n/a
37	POLR2A	chr10:27792713-27793512	GM19099	blood:	n/a	n/a
38	HDAC2	chr10:27792960-27793416	K562	blood:	n/a	chr10:27793214-27793223
39	SIN3AK20	chr10:27793079-27793745	K562	blood:	n/a	n/a
40	NFIC	chr10:27792718-27793426	GM12878	blood:	n/a	n/a
41	POLR2A	chr10:27792962-27793437	A549	lung:	n/a	n/a
42	GABPA	chr10:27792739-27793615	MCF-7	breast:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
43	MTA3	chr10:27792583-27793639	GM12878	blood:	n/a	n/a
44	MAX	chr10:27792543-27793488	GM12878	blood:	n/a	n/a
45	TAF1	chr10:27792774-27793420	GM12891	blood:	n/a	n/a
46	POLR2A	chr10:27792649-27793496	HCT-116	colon:	n/a	n/a
47	GABPA	chr10:27792925-27793505	HL-60	blood:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
48	BCL3	chr10:27792840-27793625	A549	lung:	n/a	chr10:27793457-27793470 chr10:27793004-27793013
49	ELF1	chr10:27792681-27793565	MCF-7	breast:	n/a	chr10:27793473-27793485
50	GATA2	chr10:27792829-27793576	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
RAB18	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73604008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv825319	chr10:27792807-27795876	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27792400-27793800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:27792400-27794200	Active TSS	Fetal Brain Male	brain
3	chr10:27792400-27794400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27792400-27794600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:27792400-27794800	Active TSS	Fetal Kidney	kidney
6	chr10:27792400-27795000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr10:27792600-27794000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:27792600-27794000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:27792600-27794000	Active TSS	Fetal Brain Female	brain
10	chr10:27792600-27794400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr10:27792600-27794400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:27792600-27794400	Active TSS	Fetal Muscle Trunk	muscle
13	chr10:27792600-27794600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:27792600-27794800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:27792600-27794800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:27792600-27794800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:27792600-27794800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:27792600-27795000	Active TSS	Right Atrium	heart
19	chr10:27792600-27795200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr10:27792800-27793600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:27792800-27793800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:27792800-27793800	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr10:27792800-27794000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:27792800-27794000	Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr10:27792800-27794000	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr10:27792800-27794000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr10:27792800-27794000	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr10:27792800-27794000	Active TSS	Fetal Stomach	stomach
29	chr10:27792800-27794200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:27792800-27794200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:27792800-27794200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:27792800-27794200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:27792800-27794200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:27792800-27794200	Active TSS	Fetal Heart	heart
35	chr10:27792800-27794200	Active TSS	Gastric	stomach
36	chr10:27792800-27794200	Active TSS	Lung	lung
37	chr10:27792800-27794200	Active TSS	Pancreas	Pancrea
38	chr10:27792800-27794400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr10:27792800-27794400	Active TSS	Aorta	Aorta
40	chr10:27792800-27794400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr10:27792800-27794400	Active TSS	Fetal Intestine Large	intestine
42	chr10:27792800-27794400	Active TSS	Fetal Intestine Small	intestine
43	chr10:27792800-27794400	Active TSS	Ovary	ovary
44	chr10:27792800-27794400	Active TSS	Placenta Amnion	Placenta Amnion
45	chr10:27792800-27794600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:27792800-27794600	Active TSS	Colon Smooth Muscle	Colon
47	chr10:27792800-27794600	Active TSS	Fetal Lung	lung
48	chr10:27792800-27794600	Active TSS	Left Ventricle	heart
49	chr10:27792800-27794600	Active TSS	Right Ventricle	heart
50	chr10:27792800-27794600	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links