Variant report

Variant	rs73606793
Chromosome Location	chr8:39083943-39083944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10088174	0.83[EUR][1000 genomes]
rs10088458	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10088794	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10093393	0.84[EUR][1000 genomes]
rs10094572	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10095244	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10095787	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10101558	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10101577	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10106195	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10108700	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10110383	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10111607	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10448058	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10448059	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10448062	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808917	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808920	0.83[EUR][1000 genomes]
rs10958543	0.84[EUR][1000 genomes]
rs11775433	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11775913	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11776234	0.84[EUR][1000 genomes]
rs11777233	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11777253	0.84[EUR][1000 genomes]
rs11780558	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11781014	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11781030	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11782591	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11783079	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11784002	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11784182	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11784263	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11786404	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11786406	0.84[EUR][1000 genomes]
rs11786558	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12155966	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12543265	0.84[EUR][1000 genomes]
rs12546310	0.82[AMR][1000 genomes]
rs12549006	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12675132	0.82[EUR][1000 genomes]
rs12679074	0.82[EUR][1000 genomes]
rs12682638	0.82[EUR][1000 genomes]
rs13439327	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13439544	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13439696	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13439859	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28460316	0.83[EUR][1000 genomes]
rs28505965	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28649569	0.82[EUR][1000 genomes]
rs28773215	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28788037	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28795368	0.81[EUR][1000 genomes]
rs28801793	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28812794	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28887526	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35815552	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3886041	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4128223	0.84[EUR][1000 genomes]
rs4133177	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4133178	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4316117	0.83[EUR][1000 genomes]
rs4349954	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4476977	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4513935	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4515515	0.85[EUR][1000 genomes]
rs4537270	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4585712	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4585713	0.83[EUR][1000 genomes]
rs4587293	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4733912	0.82[EUR][1000 genomes]
rs4733982	0.80[AMR][1000 genomes]
rs4733983	0.85[EUR][1000 genomes]
rs4733985	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4733988	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4733991	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4733992	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4733994	0.83[EUR][1000 genomes]
rs55716826	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55759907	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55817221	0.84[EUR][1000 genomes]
rs55892966	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55977531	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56018942	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56093547	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56392075	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57822948	0.82[EUR][1000 genomes]
rs58036010	0.82[EUR][1000 genomes]
rs6474116	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6474117	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474126	0.83[EUR][1000 genomes]
rs6981906	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6988280	0.82[EUR][1000 genomes]
rs6989252	0.81[EUR][1000 genomes]
rs6992204	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6996235	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6997278	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7000543	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7001103	0.84[EUR][1000 genomes]
rs7013701	0.83[EUR][1000 genomes]
rs7014889	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7016661	0.85[EUR][1000 genomes]
rs72500200	0.84[EUR][1000 genomes]
rs73606707	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73606713	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73606714	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73606745	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73606748	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73606767	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73606769	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73606771	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73606773	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73608630	0.83[EUR][1000 genomes]
rs73608634	0.82[EUR][1000 genomes]
rs73608636	0.83[EUR][1000 genomes]
rs7464434	0.83[EUR][1000 genomes]
rs7816763	0.81[EUR][1000 genomes]
rs7822982	0.82[EUR][1000 genomes]
rs7826829	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7843696	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7843711	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7843946	0.81[EUR][1000 genomes]
rs7845676	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9298561	0.86[EUR][1000 genomes]
rs9771995	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1027443	chr8:38993423-39181079	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539551	chr8:38993423-39181079	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv428198	chr8:39069309-39405724	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39076200-39097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:39081400-39084200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:39081600-39084000	Weak transcription	NHLF	lung
4	chr8:39083000-39084600	Weak transcription	Fetal Intestine Small	intestine
5	chr8:39083200-39085800	Weak transcription	Ovary	ovary
6	chr8:39083200-39097800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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