Variant report

Variant	rs73606917
Chromosome Location	chr14:25166877-25166878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs66561041	0.87[AFR][1000 genomes]
rs68146491	0.89[AFR][1000 genomes]
rs73606914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25159600-25170000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:25164000-25170800	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:25165200-25167800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:25165200-25168200	Weak transcription	Primary T cells from cord blood	blood
5	chr14:25165400-25167400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:25165400-25167400	Weak transcription	GM12878-XiMat	blood
7	chr14:25165400-25167600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:25165400-25167800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:25165400-25168200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:25165400-25168200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:25165400-25168200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:25165800-25167600	Weak transcription	Primary B cells from cord blood	blood
13	chr14:25165800-25168000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:25166000-25167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:25166200-25167000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:25166600-25167200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:25166600-25168000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:25166600-25168000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:25166800-25167000	Weak transcription	Pancreas	Pancrea
20	chr14:25166800-25168200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr14:25166800-25168600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr14:25166800-25169600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:25166800-25175400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links