Variant report

Variant	rs73607673
Chromosome Location	chr13:92466660-92466661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92008413..92010506-chr13:92466310..92469194,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16946937	1.00[AMR][1000 genomes]
rs57666164	0.86[AFR][1000 genomes]
rs58383288	0.93[AFR][1000 genomes]
rs58803517	0.86[AFR][1000 genomes]
rs59669659	0.98[AFR][1000 genomes]
rs59721804	0.86[AFR][1000 genomes]
rs59785653	0.90[AFR][1000 genomes]
rs60085658	0.90[AFR][1000 genomes]
rs73607624	0.98[AFR][1000 genomes]
rs73607679	1.00[AMR][1000 genomes]
rs73607684	1.00[AMR][1000 genomes]
rs73607687	1.00[AMR][1000 genomes]
rs73607696	1.00[AMR][1000 genomes]
rs73609119	0.83[AFR][1000 genomes]
rs73609121	0.83[AFR][1000 genomes]
rs73609123	0.86[AFR][1000 genomes]
rs73609139	0.90[AFR][1000 genomes]
rs73609142	0.86[AFR][1000 genomes]
rs73609143	0.86[AFR][1000 genomes]
rs73609148	0.86[AFR][1000 genomes]
rs73609164	0.90[AFR][1000 genomes]
rs73615684	0.90[AFR][1000 genomes]
rs9583968	1.00[AMR][1000 genomes]
rs9589367	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529268	chr13:92267310-92531263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv456065	chr13:92383193-92507887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv562719	chr13:92383193-92507887	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv948820	chr13:92408505-92519053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv524271	chr13:92419769-92501664	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv562720	chr13:92419769-92501664	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1036226	chr13:92421721-92501284	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1053048	chr13:92421721-92501558	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1053597	chr13:92421721-92502205	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92465800-92467800	Weak transcription	Fetal Lung	lung
2	chr13:92465800-92468400	Weak transcription	Fetal Stomach	stomach
3	chr13:92466000-92468400	Weak transcription	Colon Smooth Muscle	Colon

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