Variant report

Variant	rs73608046
Chromosome Location	chr10:28438135-28438136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11006978	1.00[AMR][1000 genomes]
rs12244014	1.00[AMR][1000 genomes]
rs12252045	1.00[AMR][1000 genomes]
rs12255835	1.00[AMR][1000 genomes]
rs12257713	1.00[AMR][1000 genomes]
rs12269079	1.00[AMR][1000 genomes]
rs58397019	1.00[AMR][1000 genomes]
rs58432720	1.00[AMR][1000 genomes]
rs58523578	1.00[AMR][1000 genomes]
rs60578320	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61533851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608047	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608051	0.87[AFR][1000 genomes]
rs73608053	0.87[AFR][1000 genomes]
rs73608057	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608070	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73608073	1.00[AMR][1000 genomes]
rs73608078	1.00[AMR][1000 genomes]
rs73608081	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894989	chr10:28384098-28449974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv949151	chr10:28386125-28455221	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
10	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:28403600-28443200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:28413200-28440600	Weak transcription	Left Ventricle	heart
4	chr10:28417000-28449200	Weak transcription	Pancreas	Pancrea
5	chr10:28417600-28458000	Weak transcription	Aorta	Aorta
6	chr10:28426800-28438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:28427200-28438200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:28427200-28440600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:28427200-28448600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:28430600-28441400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:28432000-28439600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:28434200-28439000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:28434400-28439200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:28434800-28440400	Weak transcription	Primary B cells from cord blood	blood
15	chr10:28434800-28446200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:28435200-28441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:28435600-28438800	Weak transcription	Esophagus	oesophagus
18	chr10:28435600-28439000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:28436000-28439000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr10:28436600-28438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:28436600-28439200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:28436800-28438400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:28436800-28447200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:28436800-28451800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:28437000-28438400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:28437000-28438600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:28437200-28438400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:28437200-28438600	Weak transcription	Primary T cells from cord blood	blood
29	chr10:28437200-28446600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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