Variant report

Variant	rs73608609
Chromosome Location	chr6:150008894-150008895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150005221..150006846-chr6:150008544..150010476,2	K562	blood:
2	chr6:150004823..150006721-chr6:150008544..150010327,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11963775	1.00[AMR][1000 genomes]
rs11965313	1.00[AMR][1000 genomes]
rs11966727	1.00[AMR][1000 genomes]
rs34793526	1.00[AMR][1000 genomes]
rs59324932	1.00[AMR][1000 genomes]
rs73604737	1.00[AMR][1000 genomes]
rs73608604	1.00[AMR][1000 genomes]
rs73608631	1.00[AMR][1000 genomes]
rs73610595	1.00[AMR][1000 genomes]
rs7738354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
5	chr6:149981200-150018800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
7	chr6:149994600-150012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
10	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:149998800-150009600	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:150000000-150022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:150002800-150010200	Strong transcription	Fetal Stomach	stomach
14	chr6:150002800-150012800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:150004200-150017000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:150005400-150015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:150005400-150016000	Weak transcription	Fetal Brain Male	brain
18	chr6:150005400-150021000	Weak transcription	Stomach Mucosa	stomach
19	chr6:150005400-150029800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:150005600-150009200	Weak transcription	NHLF	lung
21	chr6:150005600-150009800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:150005600-150010400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:150005600-150011200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:150005600-150011600	Weak transcription	Ovary	ovary
25	chr6:150005600-150012000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:150005600-150012000	Weak transcription	GM12878-XiMat	blood
27	chr6:150005600-150012200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:150005600-150012200	Weak transcription	NH-A	brain
29	chr6:150005600-150012400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:150005600-150012400	Weak transcription	Colonic Mucosa	Colon
31	chr6:150005600-150012400	Weak transcription	NHDF-Ad	bronchial
32	chr6:150005600-150013800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:150005600-150014000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:150005600-150014800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:150005600-150015400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:150005600-150016200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:150005600-150016400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:150005600-150018000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:150005600-150018200	Weak transcription	A549	lung
40	chr6:150005600-150023000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:150005600-150029600	Weak transcription	Aorta	Aorta
42	chr6:150005600-150030200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:150005600-150030200	Weak transcription	Fetal Heart	heart
44	chr6:150005600-150030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:150005600-150030400	Weak transcription	HSMMtube	muscle
46	chr6:150005600-150037400	Weak transcription	Esophagus	oesophagus
47	chr6:150005600-150037800	Weak transcription	Gastric	stomach
48	chr6:150005800-150009600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:150005800-150009800	Weak transcription	Lung	lung
50	chr6:150005800-150010200	Weak transcription	Primary B cells from peripheral blood	blood

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