Variant report

Variant	rs73608671
Chromosome Location	chr6:150082244-150082245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150067420..150070496-chr6:150080742..150084975,5	MCF-7	breast:
2	chr6:150070911..150073145-chr6:150082041..150085083,3	MCF-7	breast:
3	chr6:150081562..150084167-chr6:150089539..150091246,2	K562	blood:
4	chr6:150080552..150082933-chr6:150085162..150087881,2	K562	blood:
5	chr6:150081430..150084615-chr6:150085196..150088409,5	K562	blood:
6	chr6:150071337..150080563-chr6:150080588..150087592,16	K562	blood:
7	chr6:150074165..150075922-chr6:150081049..150082731,2	MCF-7	breast:
8	chr6:150080535..150082998-chr6:150090034..150092678,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120253	Chromatin interaction
ENSG00000120265	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73604797	0.91[AFR][1000 genomes]
rs73606739	0.91[AFR][1000 genomes]
rs73608608	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071800-150092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:150071800-150100200	Weak transcription	Gastric	stomach
4	chr6:150072000-150086800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:150072000-150087000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:150072000-150087200	Weak transcription	Stomach Mucosa	stomach
7	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
9	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
10	chr6:150072200-150087000	Weak transcription	Fetal Lung	lung
11	chr6:150072200-150087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:150072200-150087200	Weak transcription	Primary T cells from cord blood	blood
13	chr6:150072200-150087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:150072200-150087200	Weak transcription	NH-A	brain
15	chr6:150072400-150086800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:150072400-150087200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
19	chr6:150072600-150087000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:150072600-150087200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:150072600-150087200	Weak transcription	NHEK	skin
22	chr6:150072800-150087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:150073000-150086800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:150073000-150086800	Weak transcription	Fetal Brain Female	brain
25	chr6:150073000-150087200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:150073000-150094400	Weak transcription	Lung	lung
27	chr6:150073200-150087200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:150073200-150087200	Weak transcription	HUVEC	blood vessel
29	chr6:150073400-150083400	Weak transcription	Ovary	ovary
30	chr6:150073800-150086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:150073800-150087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:150073800-150087200	Weak transcription	NHLF	lung
33	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
34	chr6:150074000-150082400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:150074000-150082800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:150074000-150087200	Weak transcription	Hela-S3	cervix
37	chr6:150074200-150082800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:150074200-150101000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:150075800-150094800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:150077000-150085600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:150077200-150087200	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
44	chr6:150077400-150084600	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:150077400-150086800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:150077400-150087200	Weak transcription	Brain Anterior Caudate	brain
47	chr6:150077400-150087200	Weak transcription	Brain Substantia Nigra	brain
48	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
49	chr6:150077600-150087200	Weak transcription	Brain Angular Gyrus	brain
50	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas

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