Variant report

Variant	rs73610361
Chromosome Location	chr10:26189364-26189365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57158626	1.00[AMR][1000 genomes]
rs61614059	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73610362	0.83[AFR][1000 genomes]
rs73610363	0.83[AFR][1000 genomes]
rs7920789	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26188600-26189800	Weak transcription	Primary B cells from cord blood	blood
2	chr10:26188600-26190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:26188600-26197000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:26188800-26190000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:26189000-26190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:26189000-26193200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:26189200-26189600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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