Variant report

Variant	rs73612356
Chromosome Location	chr18:21090919-21090920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:21087453..21090115-chr18:21090407..21093336,2	K562	blood:
2	chr18:21090916..21092710-chr18:21095333..21097550,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2145008	0.84[EUR][1000 genomes]
rs2327854	0.84[EUR][1000 genomes]
rs4813156	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4813160	0.83[EUR][1000 genomes]
rs4814306	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6074746	0.82[EUR][1000 genomes]
rs6079429	0.83[AFR][1000 genomes]
rs6079437	0.93[EUR][1000 genomes]
rs6079457	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6079458	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6079459	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6079460	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6079464	0.82[EUR][1000 genomes]
rs6079465	0.82[EUR][1000 genomes]
rs7269525	0.84[EUR][1000 genomes]
rs73612355	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73612361	0.84[ASN][1000 genomes]
rs73612363	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34149	chr18:20858139-21221891	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv431973	chr18:20861916-21118980	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv431974	chr18:20861916-21119291	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv909458	chr18:21003061-21171145	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv995053	chr18:21057147-21333688	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv576572	chr18:21087531-21171145	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:21084400-21097400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:21084400-21098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:21084400-21099800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:21084400-21102000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:21084600-21100400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr18:21085000-21099600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr18:21085200-21091400	Strong transcription	Fetal Stomach	stomach
8	chr18:21085200-21092600	Strong transcription	Fetal Intestine Small	intestine
9	chr18:21085200-21098800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:21085400-21091600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:21085400-21118800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr18:21085600-21092200	Strong transcription	Fetal Thymus	thymus
13	chr18:21085600-21097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr18:21085600-21101400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr18:21085600-21109600	Weak transcription	Fetal Heart	heart
16	chr18:21085600-21112200	Weak transcription	Right Atrium	heart
17	chr18:21085600-21119000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr18:21085800-21091000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr18:21085800-21091800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr18:21085800-21094800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr18:21085800-21096000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr18:21085800-21098000	Weak transcription	Stomach Mucosa	stomach
23	chr18:21086000-21109400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr18:21086200-21091200	Strong transcription	Osteobl	bone
25	chr18:21086200-21091800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr18:21086200-21093600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:21086200-21115400	Strong transcription	Fetal Muscle Leg	muscle
28	chr18:21086400-21091200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr18:21086400-21091200	Strong transcription	Fetal Intestine Large	intestine
30	chr18:21086400-21091200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr18:21086400-21091400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr18:21086400-21091400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr18:21086400-21091600	Strong transcription	Primary B cells from cord blood	blood
34	chr18:21086400-21091600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr18:21086400-21091800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr18:21086400-21092000	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr18:21086400-21119000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr18:21086400-21156600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr18:21086600-21091400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr18:21086600-21092000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr18:21086600-21154000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr18:21086800-21091400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr18:21086800-21103000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr18:21086800-21109800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr18:21087200-21091400	Strong transcription	Primary T cells from cord blood	blood
46	chr18:21087400-21091000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr18:21087400-21091000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr18:21087400-21091200	Strong transcription	Brain Anterior Caudate	brain
49	chr18:21087400-21091200	Strong transcription	Esophagus	oesophagus
50	chr18:21087400-21091400	Strong transcription	Left Ventricle	heart

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