Variant report

rSNPs within LD-proxies of this variant (count:3)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150202800-150208600	Weak transcription	HSMMtube	muscle
2	chr6:150204200-150206800	Weak transcription	Hela-S3	cervix
3	chr6:150205000-150206000	Enhancers	NHLF	lung
4	chr6:150205000-150210400	Enhancers	HMEC	breast
5	chr6:150205200-150206000	Enhancers	Adipose Nuclei	Adipose
6	chr6:150205400-150206000	Enhancers	Ovary	ovary
7	chr6:150205600-150206000	Enhancers	Right Ventricle	heart
8	chr6:150205600-150206600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150205600-150206800	Weak transcription	A549	lung
10	chr6:150205600-150207800	Weak transcription	NHDF-Ad	bronchial
11	chr6:150205600-150208200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:150205600-150208400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:150205600-150216000	Weak transcription	Right Atrium	heart
14	chr6:150205800-150206000	Enhancers	Esophagus	oesophagus
15	chr6:150205800-150206200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150205800-150208000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:150205800-150208000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:150205800-150208000	Enhancers	NHEK	skin
19	chr6:150205800-150208400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:150205800-150210200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:150205800-150216000	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search: