Variant report

Variant	rs73612856
Chromosome Location	chr13:110520876-110520877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110516111..110518127-chr13:110519697..110522544,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs73612807	1.00[AFR][1000 genomes]
rs73612812	1.00[AFR][1000 genomes]
rs73612813	1.00[AFR][1000 genomes]
rs73612815	1.00[AFR][1000 genomes]
rs73612817	1.00[AFR][1000 genomes]
rs73612819	1.00[AFR][1000 genomes]
rs73612829	1.00[AFR][1000 genomes]
rs73612830	1.00[AFR][1000 genomes]
rs73612832	1.00[AFR][1000 genomes]
rs73612834	1.00[AFR][1000 genomes]
rs73612840	1.00[AFR][1000 genomes]
rs73612841	1.00[AFR][1000 genomes]
rs73612845	1.00[AFR][1000 genomes]
rs73612848	1.00[AFR][1000 genomes]
rs73612855	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv32627	chr13:110515211-110524579	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110515600-110521000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:110515600-110521200	Weak transcription	HSMM	muscle
3	chr13:110515800-110521000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:110515800-110521200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:110516000-110521600	Weak transcription	NHEK	skin
6	chr13:110516000-110523400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:110519000-110521800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:110520000-110521200	Enhancers	Pancreas	Pancrea
9	chr13:110520000-110521600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr13:110520200-110521400	Enhancers	A549	lung
11	chr13:110520200-110521600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr13:110520200-110521600	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:110520200-110521800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:110520200-110521800	Enhancers	Small Intestine	intestine
15	chr13:110520200-110522200	Enhancers	Hela-S3	cervix
16	chr13:110520400-110521400	Enhancers	Duodenum Mucosa	Duodenum
17	chr13:110520600-110521800	Enhancers	Liver	Liver
18	chr13:110520800-110521000	Enhancers	Brain Germinal Matrix	brain
19	chr13:110520800-110521000	Enhancers	Left Ventricle	heart
20	chr13:110520800-110521000	Enhancers	Lung	lung
21	chr13:110520800-110521600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:110520800-110521600	Enhancers	Fetal Intestine Small	intestine
23	chr13:110520800-110521800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links