Variant report

Variant	rs73615917
Chromosome Location	chr6:145301462-145301463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11962423	0.83[EUR][1000 genomes]
rs11969952	0.83[EUR][1000 genomes]
rs1416295	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34008244	0.83[EUR][1000 genomes]
rs35177773	0.83[EUR][1000 genomes]
rs57121708	0.83[EUR][1000 genomes]
rs58954256	0.83[EUR][1000 genomes]
rs59595863	0.83[EUR][1000 genomes]
rs60386360	0.83[EUR][1000 genomes]
rs6570664	0.83[EUR][1000 genomes]
rs6570665	0.83[EUR][1000 genomes]
rs73612286	0.83[EUR][1000 genomes]
rs73613905	0.83[EUR][1000 genomes]
rs73613906	0.83[EUR][1000 genomes]
rs73613909	0.83[EUR][1000 genomes]
rs73613921	0.83[EUR][1000 genomes]
rs73613930	0.83[EUR][1000 genomes]
rs73613932	0.83[EUR][1000 genomes]
rs73613933	0.83[EUR][1000 genomes]
rs73613935	0.83[EUR][1000 genomes]
rs73613942	0.83[EUR][1000 genomes]
rs73613944	0.83[EUR][1000 genomes]
rs73613947	0.83[EUR][1000 genomes]
rs73613948	0.83[EUR][1000 genomes]
rs73613955	0.83[EUR][1000 genomes]
rs73613983	0.83[EUR][1000 genomes]
rs7739415	0.83[EUR][1000 genomes]
rs7756445	0.83[EUR][1000 genomes]
rs7759704	0.83[EUR][1000 genomes]
rs7759730	0.83[EUR][1000 genomes]
rs7773726	0.83[EUR][1000 genomes]
rs9322007	0.83[EUR][1000 genomes]
rs9322010	0.83[EUR][1000 genomes]
rs9322011	0.83[EUR][1000 genomes]
rs9322012	0.83[EUR][1000 genomes]
rs9322013	0.83[EUR][1000 genomes]
rs9322014	0.83[EUR][1000 genomes]
rs9484929	0.83[EUR][1000 genomes]
rs9484931	0.83[EUR][1000 genomes]
rs9484932	0.83[EUR][1000 genomes]
rs9497136	0.83[EUR][1000 genomes]
rs9497137	0.83[EUR][1000 genomes]
rs9497144	0.83[EUR][1000 genomes]
rs9497145	0.83[EUR][1000 genomes]
rs9497149	0.83[EUR][1000 genomes]
rs9497152	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145299000-145307400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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