Variant report

Variant	rs73616996
Chromosome Location	chr16:75895756-75895757
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16943676	0.83[AMR][1000 genomes]
rs57999637	1.00[AMR][1000 genomes]
rs60258405	1.00[AMR][1000 genomes]
rs60531672	0.83[AMR][1000 genomes]
rs7190109	0.85[AMR][1000 genomes]
rs7197182	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199397	0.83[AMR][1000 genomes]
rs73616907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616999	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv3416058	chr16:75863360-76086224	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1057858	chr16:75895639-76054551	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75894800-75895800	Enhancers	Brain Cingulate Gyrus	brain
2	chr16:75894800-75896200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:75894800-75896200	Enhancers	Brain Substantia Nigra	brain
4	chr16:75894800-75896200	Enhancers	Fetal Brain Male	brain
5	chr16:75894800-75901600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr16:75894800-75902000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:75895000-75896000	Enhancers	Brain Angular Gyrus	brain
8	chr16:75895000-75896200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:75895200-75896000	Enhancers	Brain Anterior Caudate	brain
10	chr16:75895200-75897200	Weak transcription	Brain Germinal Matrix	brain
11	chr16:75895400-75896000	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr16:75895600-75895800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr16:75895600-75896000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr16:75895600-75896000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:75895600-75896200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:75895600-75896200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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