Variant report

Variant	rs73617001
Chromosome Location	chr13:110662426-110662427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61239565	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73618805	0.81[ASN][1000 genomes]
rs7998434	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110651800-110662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:110653600-110663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:110654000-110664000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:110655000-110662800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:110658800-110662800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:110658800-110663000	Weak transcription	A549	lung
7	chr13:110659000-110662600	Weak transcription	HSMMtube	muscle
8	chr13:110659000-110662600	Weak transcription	Osteobl	bone
9	chr13:110659000-110662800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:110659000-110663400	Weak transcription	NHDF-Ad	bronchial
11	chr13:110659200-110662600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:110659200-110663000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:110659200-110663000	Weak transcription	NH-A	brain
14	chr13:110659200-110664000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:110659200-110664200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:110659200-110669800	Weak transcription	Pancreas	Pancrea
17	chr13:110659400-110662800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:110659400-110662800	Weak transcription	NHEK	skin
19	chr13:110659400-110663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:110660200-110664000	Weak transcription	Hela-S3	cervix
21	chr13:110661000-110666800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:110661200-110669400	Enhancers	HSMM	muscle
23	chr13:110661600-110662600	Weak transcription	HMEC	breast
24	chr13:110661600-110664600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:110662000-110664200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:110662200-110664200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr13:110662200-110666000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr13:110662400-110664000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr13:110662400-110664000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links