Variant report

Variant	rs73617643
Chromosome Location	chr10:6317759-6317760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:6317085-6317934	MCF10A-Er-Src	breast:	n/a	chr10:6317445-6317456 chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
2	FOSL1	chr10:6317007-6317776	HCT-116	colon:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
3	ATF2	chr10:6316828-6317760	GM12878	blood:	n/a	n/a
4	CEBPB	chr10:6317040-6317972	IMR90	lung:	n/a	chr10:6317549-6317560
5	JUN	chr10:6317180-6317834	HUVEC	blood vessel:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
6	CEBPB	chr10:6316990-6318139	A549	lung:	n/a	chr10:6317549-6317560 chr10:6317038-6317050
7	STAT3	chr10:6317008-6317974	MCF10A-Er-Src	breast:	n/a	chr10:6317558-6317569
8	POLR2A	chr10:6317016-6317939	MCF10A-Er-Src	breast:	n/a	n/a
9	JUND	chr10:6316890-6317783	HCT-116	colon:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317445-6317456 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
10	ELF1	chr10:6316949-6317770	HCT-116	colon:	n/a	chr10:6317373-6317386 chr10:6317349-6317362
11	BHLHE40	chr10:6317198-6317775	A549	lung:	n/a	n/a
12	CEBPB	chr10:6317166-6317947	Hela-S3	cervix:	n/a	chr10:6317549-6317560
13	STAT3	chr10:6316898-6317785	MCF10A-Er-Src	breast:	n/a	chr10:6317558-6317569
14	EP300	chr10:6317004-6317781	SK-N-SH	brain:	n/a	n/a
15	MAX	chr10:6316810-6317769	HCT-116	colon:	n/a	chr10:6317169-6317178
16	POLR2A	chr10:6317116-6317905	HCT-116	colon:	n/a	n/a
17	JUND	chr10:6317269-6317876	HepG2	liver:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317445-6317456 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
18	EP300	chr10:6316824-6318461	A549	lung:	n/a	chr10:6318264-6318271
19	CEBPB	chr10:6317045-6317965	A549	lung:	n/a	chr10:6317549-6317560
20	E2F6	chr10:6316810-6318196	A549	lung:	n/a	n/a
21	MAX	chr10:6316798-6318245	A549	lung:	n/a	chr10:6317169-6317178
22	MYC	chr10:6317106-6317989	MCF10A-Er-Src	breast:	n/a	chr10:6317169-6317178
23	EP300	chr10:6316870-6317795	A549	lung:	n/a	n/a
24	SP1	chr10:6316749-6318413	A549	lung:	n/a	chr10:6317156-6317165 chr10:6317155-6317167 chr10:6317156-6317166 chr10:6317155-6317167 chr10:6317157-6317166 chr10:6317156-6317165 chr10:6317156-6317166
25	STAT3	chr10:6317011-6317861	MCF10A-Er-Src	breast:	n/a	chr10:6317558-6317569
26	POLR2A	chr10:6316857-6317812	U87	brain:	n/a	n/a
27	TCF12	chr10:6316909-6317797	SK-N-SH	brain:	n/a	chr10:6317140-6317150
28	SP1	chr10:6316782-6317833	A549	lung:	n/a	chr10:6317156-6317165 chr10:6317155-6317167 chr10:6317156-6317166 chr10:6317155-6317167 chr10:6317157-6317166 chr10:6317156-6317165 chr10:6317156-6317166
29	ZNF384	chr10:6316727-6317772	GM12878	blood:	n/a	n/a
30	SRF	chr10:6316797-6317766	HCT-116	colon:	n/a	chr10:6317157-6317167
31	PML	chr10:6316935-6317839	GM12878	blood:	n/a	chr10:6317445-6317454
32	MAX	chr10:6316957-6317988	A549	lung:	n/a	chr10:6317169-6317178
33	FOS	chr10:6316901-6317782	HUVEC	blood vessel:	n/a	chr10:6317445-6317456 chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
34	JUND	chr10:6317000-6317785	SK-N-SH	brain:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317445-6317456 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
35	JUND	chr10:6317168-6317785	Hela-S3	cervix:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317445-6317456 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
36	NFIC	chr10:6316755-6317846	GM12878	blood:	n/a	n/a
37	JUND	chr10:6316667-6317823	SK-N-SH	brain:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317445-6317456 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
38	RUNX3	chr10:6316705-6317814	GM12878	blood:	n/a	chr10:6317032-6317047
39	FOSL2	chr10:6317038-6317774	SK-N-SH	brain:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
40	FOSL2	chr10:6316627-6318330	A549	lung:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
41	TCF12	chr10:6316635-6318236	A549	lung:	n/a	chr10:6317140-6317150
42	FOS	chr10:6317157-6317959	MCF10A-Er-Src	breast:	n/a	chr10:6317445-6317456 chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
43	MAX	chr10:6316722-6318392	A549	lung:	n/a	chr10:6317169-6317178
44	SIX5	chr10:6316506-6318196	A549	lung:	n/a	n/a
45	BHLHE40	chr10:6316716-6317987	GM12878	blood:	n/a	n/a
46	FOSL1	chr10:6316918-6317796	HCT-116	colon:	n/a	chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
47	FOS	chr10:6317130-6317941	MCF10A-Er-Src	breast:	n/a	chr10:6317445-6317456 chr10:6317450-6317458 chr10:6317445-6317457 chr10:6317446-6317456 chr10:6317446-6317455 chr10:6317447-6317456
48	GATA3	chr10:6316906-6318578	A549	lung:	n/a	chr10:6318463-6318473 chr10:6318466-6318473
49	POLR2A	chr10:6316980-6317779	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6242922..6247696-chr10:6316001..6319432,5	MCF-7	breast:
2	chr10:6298094..6299703-chr10:6315847..6318210,2	K562	blood:
3	chr10:6316928..6317771-chr7:150783534..150784313,2	Hela-S3	cervix:
4	chr10:6316397..6317934-chr10:6328734..6330716,2	MCF-7	breast:
5	chr10:6282149..6284727-chr10:6315762..6318324,2	MCF-7	breast:
6	chr10:6263461..6265424-chr10:6315540..6318347,2	K562	blood:
7	chr10:6317151..6318680-chr10:6338144..6339760,2	MCF-7	breast:
8	chr10:6315744..6318557-chr10:6324362..6327145,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215244	TF binding region
ENSG00000133612	Chromatin interaction
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7077335	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6313800-6321000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:6314400-6321800	Weak transcription	Gastric	stomach
3	chr10:6315200-6318000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:6315200-6318800	Enhancers	Fetal Lung	lung
5	chr10:6315400-6318200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:6316400-6318000	Enhancers	Primary B cells from cord blood	blood
7	chr10:6316400-6318200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr10:6316400-6318200	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:6316400-6318600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:6316600-6318000	Enhancers	Right Ventricle	heart
11	chr10:6316600-6318200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:6316600-6318200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:6316600-6318200	Enhancers	HMEC	breast
14	chr10:6316600-6318200	Enhancers	NHEK	skin
15	chr10:6316600-6318600	Enhancers	Small Intestine	intestine
16	chr10:6316600-6321600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:6316800-6317800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:6316800-6318000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:6316800-6318000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:6316800-6318000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr10:6316800-6318000	Enhancers	Stomach Mucosa	stomach
22	chr10:6316800-6318200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr10:6316800-6318200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:6316800-6318200	Flanking Active TSS	A549	lung
25	chr10:6317000-6317800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:6317000-6317800	Active TSS	Primary T cells from cord blood	blood
27	chr10:6317000-6317800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr10:6317000-6317800	Enhancers	Fetal Muscle Trunk	muscle
29	chr10:6317000-6317800	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr10:6317000-6317800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr10:6317000-6317800	Flanking Active TSS	Osteobl	bone
32	chr10:6317000-6318000	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:6317000-6318000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr10:6317000-6318000	Enhancers	Psoas Muscle	Psoas
35	chr10:6317000-6318000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:6317000-6318000	Enhancers	Spleen	Spleen
37	chr10:6317000-6318000	Flanking Active TSS	GM12878-XiMat	blood
38	chr10:6317000-6318200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:6317000-6318200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:6317000-6318200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr10:6317000-6318200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:6317000-6318200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr10:6317000-6318600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:6317000-6318600	Enhancers	Fetal Stomach	stomach
45	chr10:6317200-6317800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr10:6317200-6317800	Weak transcription	Aorta	Aorta
47	chr10:6317200-6317800	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr10:6317200-6318200	Enhancers	Fetal Intestine Small	intestine
49	chr10:6317200-6318600	Enhancers	Brain Germinal Matrix	brain
50	chr10:6317400-6317800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links