Variant report

Variant	rs73619633
Chromosome Location	chr10:6636466-6636467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17138482	0.80[AFR][1000 genomes]
rs73619629	1.00[EUR][1000 genomes]
rs73619630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73619631	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6624200-6637000	Weak transcription	A549	lung
2	chr10:6626200-6643400	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:6626200-6645200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:6628000-6644600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:6628800-6644600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:6631200-6644800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:6632000-6645000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:6632000-6645200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:6633200-6637600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr10:6633400-6645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:6634400-6636600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:6634400-6638200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:6634600-6637200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:6634600-6637800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:6634600-6642200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:6635200-6636600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:6635200-6636800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:6635200-6636800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:6635200-6636800	Enhancers	HMEC	breast
20	chr10:6635200-6637000	Enhancers	Thymus	Thymus
21	chr10:6635400-6636600	Enhancers	Brain Substantia Nigra	brain
22	chr10:6635400-6636800	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:6635400-6637400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:6635400-6641400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:6635400-6642200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:6635600-6636600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr10:6635600-6637000	Enhancers	Brain Angular Gyrus	brain
28	chr10:6635600-6637400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr10:6635600-6637600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:6635600-6637600	Enhancers	Primary T cells from cord blood	blood
31	chr10:6635600-6640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:6635600-6641600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:6635800-6636600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:6635800-6637400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:6635800-6642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:6636000-6637400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:6636200-6636600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr10:6636200-6637800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr10:6636400-6636600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:6636400-6636600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:6636400-6636600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:6636400-6636600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:6636400-6636600	Enhancers	Brain Anterior Caudate	brain
44	chr10:6636400-6636800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:6636400-6636800	Genic enhancers	Fetal Thymus	thymus
46	chr10:6636400-6637400	Enhancers	Brain Hippocampus Middle	brain

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