Variant report

Variant	rs73621305
Chromosome Location	chr10:6443727-6443728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6244491..6245560-chr10:6443444..6444008,3	MCF-7	breast:
2	chr10:6319800..6323554-chr10:6441503..6444162,3	MCF-7	breast:
3	chr10:6244432..6245265-chr10:6443133..6444021,2	HCT-116	colon:
4	chr10:6244728..6245626-chr10:6442928..6444352,4	MCF-7	breast:
5	chr10:6274299..6277760-chr10:6442222..6445453,4	MCF-7	breast:
6	chr10:6240172..6247565-chr10:6441706..6450964,34	MCF-7	breast:
7	chr10:6185039..6188332-chr10:6441868..6445811,4	MCF-7	breast:
8	chr10:6248376..6251370-chr10:6442992..6444968,2	MCF-7	breast:
9	chr10:6130381..6131202-chr10:6443468..6444259,4	MCF-7	breast:
10	chr10:6243853..6245516-chr10:6443438..6444447,10	MCF-7	breast:
11	chr10:6244197..6245439-chr10:6443330..6444264,9	MCF-7	breast:
12	chr10:6056205..6056760-chr10:6443486..6444349,2	K562	blood:
13	chr10:6130141..6132249-chr10:6442225..6444513,2	MCF-7	breast:
14	chr10:6436665..6438310-chr10:6442602..6444402,2	MCF-7	breast:
15	chr10:6264043..6266844-chr10:6441724..6444209,2	MCF-7	breast:
16	chr10:6130395..6131251-chr10:6443505..6444226,2	MCF-7	breast:
17	chr10:6339736..6340619-chr10:6443459..6444026,2	MCF-7	breast:
18	chr10:6150553..6151547-chr10:6443502..6444434,6	MCF-7	breast:
19	chr10:6244204..6245257-chr10:6443423..6444410,6	K562	blood:
20	chr10:6336971..6341697-chr10:6441247..6445868,11	MCF-7	breast:
21	chr10:6335347..6345426-chr10:6438966..6446500,25	MCF-7	breast:
22	chr10:6212333..6214108-chr10:6443084..6445414,2	MCF-7	breast:
23	chr10:6149768..6153003-chr10:6443170..6446281,4	MCF-7	breast:
24	chr10:6355714..6359747-chr10:6439655..6444608,4	MCF-7	breast:
25	chr10:6256631..6260538-chr10:6441320..6445135,3	MCF-7	breast:
26	chr10:6203235..6207397-chr10:6442888..6446681,6	MCF-7	breast:
27	chr10:6241662..6248347-chr10:6438932..6450669,77	MCF-7	breast:
28	chr10:6213842..6217578-chr10:6440215..6444300,4	MCF-7	breast:
29	chr10:6242432..6246292-chr10:6442347..6445455,4	K562	blood:
30	chr10:6151002..6151533-chr10:6443468..6444009,2	K562	blood:
31	chr10:6433781..6435958-chr10:6440894..6443926,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000226705	Chromatin interaction
ENSG00000170525	Chromatin interaction
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56793602	1.00[AMR][1000 genomes]
rs59082709	1.00[AMR][1000 genomes]
rs59172900	1.00[AMR][1000 genomes]
rs644180	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6433800-6448600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:6437200-6444000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:6437600-6444400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:6440600-6444000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr10:6441000-6443800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:6441400-6444000	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:6441800-6445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:6442000-6447200	Weak transcription	Spleen	Spleen
9	chr10:6442200-6443800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:6442200-6443800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:6442400-6443800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:6442600-6444000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:6442800-6444000	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr10:6443200-6443800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:6443200-6443800	Enhancers	Placenta	Placenta
16	chr10:6443200-6443800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr10:6443200-6443800	Flanking Active TSS	Hela-S3	cervix
18	chr10:6443200-6444000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:6443200-6444000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:6443200-6444000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr10:6443400-6443800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:6443400-6443800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:6443400-6443800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:6443400-6443800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr10:6443400-6443800	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr10:6443400-6443800	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr10:6443400-6443800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr10:6443400-6443800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr10:6443400-6443800	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr10:6443400-6443800	Flanking Active TSS	Stomach Mucosa	stomach
31	chr10:6443400-6443800	Flanking Active TSS	HSMMtube	muscle
32	chr10:6443400-6443800	Flanking Active TSS	HUVEC	blood vessel
33	chr10:6443400-6443800	Flanking Active TSS	Osteobl	bone
34	chr10:6443400-6444000	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr10:6443400-6444000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:6443400-6444000	Active TSS	Brain Angular Gyrus	brain
37	chr10:6443400-6444000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr10:6443400-6444000	Active TSS	Fetal Intestine Small	intestine
39	chr10:6443400-6444000	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr10:6443400-6444000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr10:6443400-6444000	Flanking Active TSS	K562	blood
42	chr10:6443400-6444000	Flanking Active TSS	NH-A	brain
43	chr10:6443400-6444200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr10:6443400-6444200	Bivalent Enhancer	Fetal Thymus	thymus
45	chr10:6443400-6445000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr10:6443400-6452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:6443600-6443800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
48	chr10:6443600-6443800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:6443600-6443800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:6443600-6443800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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