Variant report

Variant	rs73621325
Chromosome Location	chr10:6452562-6452563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6447268..6450081-chr10:6450323..6453408,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17156313	1.00[AMR][1000 genomes]
rs58864263	1.00[AMR][1000 genomes]
rs61093141	1.00[AMR][1000 genomes]
rs73605109	1.00[AMR][1000 genomes]
rs73605113	1.00[AMR][1000 genomes]
rs73605129	1.00[AMR][1000 genomes]
rs73607010	1.00[AMR][1000 genomes]
rs73621310	1.00[AMR][1000 genomes]
rs73621317	1.00[AMR][1000 genomes]
rs7923721	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6449600-6452600	Weak transcription	Pancreas	Pancrea
2	chr10:6450600-6454000	Enhancers	Fetal Lung	lung
3	chr10:6451000-6452800	Enhancers	Fetal Stomach	stomach
4	chr10:6451400-6452800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:6451400-6452800	Enhancers	Fetal Muscle Leg	muscle
6	chr10:6451400-6453600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:6451600-6452800	Enhancers	Adipose Nuclei	Adipose
8	chr10:6451600-6452800	Enhancers	HSMM	muscle
9	chr10:6451600-6453200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:6451600-6453200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:6451600-6453400	Enhancers	Colon Smooth Muscle	Colon
12	chr10:6451600-6453800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:6451800-6452600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:6451800-6452600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:6451800-6452600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:6451800-6452600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:6451800-6452600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:6451800-6452800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:6451800-6452800	Enhancers	Stomach Mucosa	stomach
20	chr10:6451800-6453800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:6451800-6453800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:6451800-6453800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr10:6452000-6452600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr10:6452000-6452600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:6452000-6452600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:6452000-6452600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:6452000-6452600	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:6452000-6452600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:6452000-6452600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:6452000-6452600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:6452000-6452600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:6452000-6452600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:6452000-6452600	Enhancers	Brain Angular Gyrus	brain
34	chr10:6452000-6452600	Enhancers	Brain Anterior Caudate	brain
35	chr10:6452000-6452600	Enhancers	Brain Germinal Matrix	brain
36	chr10:6452000-6452600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:6452000-6452600	Enhancers	Brain Substantia Nigra	brain
38	chr10:6452000-6452800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr10:6452000-6452800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:6452000-6452800	Enhancers	Placenta	Placenta
41	chr10:6452000-6452800	Enhancers	Psoas Muscle	Psoas
42	chr10:6452000-6452800	Enhancers	Right Ventricle	heart
43	chr10:6452000-6452800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr10:6452200-6452600	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr10:6452200-6452600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:6452200-6452600	Active TSS	Rectal Smooth Muscle	rectum
47	chr10:6452200-6452800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:6452200-6453400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr10:6452200-6468200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:6452400-6452800	Enhancers	Primary T cells from cord blood	blood

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