Variant report

Variant	rs736222
Chromosome Location	chr13:49776340-49776341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:49775679..49778622-chr13:49783587..49785713,2	K562	blood:
2	chr13:49774919..49777851-chr13:49778134..49781033,2	K562	blood:
3	chr13:49770099..49774172-chr13:49774715..49777602,6	K562	blood:

Variant related genes	Relation type
ENSG00000102531	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1535922	0.82[JPT][hapmap]
rs1928109	0.91[JPT][hapmap]
rs1937181	0.91[JPT][hapmap]
rs2183095	0.82[JPT][hapmap]
rs2407266	0.82[JPT][hapmap]
rs2987528	0.91[JPT][hapmap]
rs2987530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2994377	0.91[JPT][hapmap]
rs2994378	0.91[JPT][hapmap]
rs2994379	0.91[JPT][hapmap]
rs2994380	0.91[JPT][hapmap]
rs3012116	0.91[JPT][hapmap]
rs3012117	0.91[JPT][hapmap]
rs3012121	0.91[JPT][hapmap]
rs3012127	0.95[JPT][hapmap]
rs60569686	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535145	0.91[JPT][hapmap]
rs9535154	0.86[JPT][hapmap]
rs9535155	0.86[JPT][hapmap]
rs9535166	0.86[JPT][hapmap]
rs9535167	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49687600-49789000	Weak transcription	Stomach Mucosa	stomach
2	chr13:49737800-49788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:49738000-49777000	Weak transcription	Small Intestine	intestine
4	chr13:49738400-49785200	Strong transcription	Liver	Liver
5	chr13:49738600-49785000	Strong transcription	Dnd41	blood
6	chr13:49739600-49786400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:49740200-49786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:49740400-49784800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:49740600-49786600	Strong transcription	Placenta	Placenta
10	chr13:49741600-49783400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr13:49742600-49783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:49745600-49783400	Strong transcription	Duodenum Mucosa	Duodenum
13	chr13:49748800-49790600	Weak transcription	K562	blood
14	chr13:49753200-49787600	Weak transcription	Psoas Muscle	Psoas
15	chr13:49756600-49785400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:49756600-49786400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:49756800-49782800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr13:49759400-49785000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr13:49759600-49783400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:49759800-49783000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr13:49759800-49783200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr13:49760000-49783400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr13:49760000-49785000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:49762800-49789200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:49763000-49788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr13:49763400-49789200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr13:49764000-49782600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr13:49764400-49783400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr13:49765600-49793800	Weak transcription	A549	lung
30	chr13:49767600-49782200	Weak transcription	Fetal Brain Male	brain
31	chr13:49768600-49786600	Strong transcription	HSMM	muscle
32	chr13:49769000-49781800	Strong transcription	GM12878-XiMat	blood
33	chr13:49769800-49782800	Strong transcription	Fetal Intestine Large	intestine
34	chr13:49769800-49783000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr13:49769800-49785400	Strong transcription	Fetal Thymus	thymus
36	chr13:49770000-49783600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr13:49770000-49784800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr13:49770600-49785000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr13:49770800-49783800	Strong transcription	HUVEC	blood vessel
40	chr13:49771000-49782000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr13:49771000-49782800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:49771000-49783200	Strong transcription	Primary B cells from cord blood	blood
43	chr13:49771000-49786600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:49771600-49782800	Strong transcription	HepG2	liver
45	chr13:49771800-49782800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr13:49772200-49776800	Weak transcription	Hela-S3	cervix
47	chr13:49772800-49788600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr13:49772800-49789000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr13:49772800-49789000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr13:49773000-49789600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links