Variant report

Variant	rs73622716
Chromosome Location	chr19:37636416-37636417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs12460043	0.88[AFR][1000 genomes]
rs12460087	0.88[AFR][1000 genomes]
rs12460498	0.88[AFR][1000 genomes]
rs12460556	0.88[AFR][1000 genomes]
rs12460557	0.88[AFR][1000 genomes]
rs12460577	0.88[AFR][1000 genomes]
rs12460798	0.88[AFR][1000 genomes]
rs12460800	0.88[AFR][1000 genomes]
rs12462276	0.88[AFR][1000 genomes]
rs1521097	0.88[AFR][1000 genomes]
rs1521098	0.88[AFR][1000 genomes]
rs1521099	0.88[AFR][1000 genomes]
rs34191527	0.88[AFR][1000 genomes]
rs56745069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57057279	0.88[AFR][1000 genomes]
rs57080651	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57231148	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57505463	0.88[AFR][1000 genomes]
rs58017177	0.88[AFR][1000 genomes]
rs58378903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58409556	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58948692	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59043209	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59044151	0.88[AFR][1000 genomes]
rs59055784	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59447056	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60096362	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60418129	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60561021	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765291	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61056688	0.88[AFR][1000 genomes]
rs61166122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61354972	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61371510	0.88[AFR][1000 genomes]
rs73618098	0.88[AFR][1000 genomes]
rs73618496	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620013	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620807	0.88[AFR][1000 genomes]
rs73620810	0.88[AFR][1000 genomes]
rs73620811	0.88[AFR][1000 genomes]
rs73620813	0.83[AFR][1000 genomes]
rs73620816	0.88[AFR][1000 genomes]
rs73620836	0.88[AFR][1000 genomes]
rs73620839	0.88[AFR][1000 genomes]
rs73620840	0.88[AFR][1000 genomes]
rs73620843	0.88[AFR][1000 genomes]
rs73620851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620852	0.88[AFR][1000 genomes]
rs73620854	0.88[AFR][1000 genomes]
rs73620860	0.88[AFR][1000 genomes]
rs73620862	0.88[AFR][1000 genomes]
rs73620866	0.88[AFR][1000 genomes]
rs73620870	0.88[AFR][1000 genomes]
rs73620899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621705	1.00[AMR][1000 genomes]
rs73621760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623522	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623524	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623526	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623563	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623564	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625207	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625229	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625241	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625242	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626558	0.88[AFR][1000 genomes]
rs73626561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626564	0.88[AFR][1000 genomes]
rs73626571	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626582	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv2477	chr19:37617348-37662207	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37613400-37642200	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37613400-37642200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:37613800-37662200	ZNF genes & repeats	Liver	Liver
4	chr19:37634400-37657800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:37634800-37642600	ZNF genes & repeats	Brain Germinal Matrix	brain
6	chr19:37635000-37637000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
7	chr19:37635000-37638400	ZNF genes & repeats	Aorta	Aorta
8	chr19:37635000-37641800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
9	chr19:37635000-37642000	ZNF genes & repeats	Fetal Brain Male	brain
10	chr19:37635000-37642200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:37635000-37656200	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:37635200-37636600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
13	chr19:37635200-37636600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr19:37635200-37636600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:37635200-37636600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr19:37635200-37638400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
17	chr19:37635200-37642200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:37635200-37642200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr19:37635200-37642200	ZNF genes & repeats	Fetal Lung	lung
20	chr19:37635200-37642200	ZNF genes & repeats	Ovary	ovary
21	chr19:37635200-37661400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr19:37635200-37661600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:37635400-37636600	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr19:37635400-37636600	ZNF genes & repeats	Brain Angular Gyrus	brain
25	chr19:37635400-37636600	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr19:37635400-37636600	ZNF genes & repeats	Fetal Heart	heart
27	chr19:37635400-37638200	ZNF genes & repeats	Left Ventricle	heart
28	chr19:37635400-37638400	ZNF genes & repeats	Lung	lung
29	chr19:37635400-37642000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr19:37635400-37642200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:37635600-37636600	ZNF genes & repeats	Colon Smooth Muscle	Colon
32	chr19:37635600-37642200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr19:37635600-37642200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr19:37635800-37638400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr19:37635800-37642000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr19:37635800-37642200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr19:37635800-37642800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr19:37636000-37636600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr19:37636000-37638000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr19:37636200-37637400	Weak transcription	HSMMtube	muscle
41	chr19:37636200-37642000	ZNF genes & repeats	Psoas Muscle	Psoas
42	chr19:37636400-37637400	Weak transcription	Brain Substantia Nigra	brain
43	chr19:37636400-37637400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:37636400-37637400	Weak transcription	Dnd41	blood

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