Variant report

Variant	rs73623482
Chromosome Location	chr8:20988556-20988557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57464904	1.00[AFR][1000 genomes]
rs73620202	1.00[AFR][1000 genomes]
rs73623448	1.00[AFR][1000 genomes]
rs73623450	1.00[AFR][1000 genomes]
rs73623458	1.00[AFR][1000 genomes]
rs73623476	1.00[AFR][1000 genomes]
rs73623478	1.00[AFR][1000 genomes]
rs73625111	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20982000-20989600	Enhancers	Fetal Heart	heart
2	chr8:20986400-20988600	Enhancers	Fetal Thymus	thymus
3	chr8:20986400-20989000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:20986400-20989000	Enhancers	Left Ventricle	heart
5	chr8:20986400-20989600	Enhancers	Fetal Muscle Leg	muscle
6	chr8:20986800-20989200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:20986800-20989200	Enhancers	Colon Smooth Muscle	Colon
8	chr8:20987000-20988800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:20987000-20988800	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:20987000-20988800	Enhancers	Psoas Muscle	Psoas
11	chr8:20987000-20989000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:20987000-20989000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr8:20987000-20989600	Enhancers	Lung	lung
14	chr8:20987200-20988800	Enhancers	Brain Hippocampus Middle	brain
15	chr8:20987200-20988800	Enhancers	Fetal Stomach	stomach
16	chr8:20987600-20988800	Enhancers	Brain Germinal Matrix	brain
17	chr8:20987600-20989000	Enhancers	Fetal Lung	lung
18	chr8:20987600-20989000	Enhancers	Stomach Smooth Muscle	stomach
19	chr8:20987800-20988600	Enhancers	Fetal Brain Male	brain
20	chr8:20987800-20989400	Enhancers	Rectal Smooth Muscle	rectum
21	chr8:20988000-20988600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr8:20988000-20989000	Enhancers	Fetal Brain Female	brain
23	chr8:20988000-20989200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr8:20988000-20989200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:20988200-20988800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:20988200-20988800	Weak transcription	Placenta	Placenta
27	chr8:20988200-20989400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:20988200-20996800	Weak transcription	Right Atrium	heart
29	chr8:20988400-20988800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links