Variant report

Variant	rs73623490
Chromosome Location	chr11:105102296-105102297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17104030	0.82[AFR][1000 genomes]
rs57893070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58197626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60121517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60296474	1.00[AMR][1000 genomes]
rs73621583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621592	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623314	0.82[AFR][1000 genomes]
rs73623315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623348	1.00[AMR][1000 genomes]
rs73623381	1.00[AMR][1000 genomes]
rs73623395	1.00[AMR][1000 genomes]
rs73623403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623422	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623441	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623453	1.00[AMR][1000 genomes]
rs73623454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623473	1.00[AMR][1000 genomes]
rs73623483	0.82[AFR][1000 genomes]
rs73623484	0.82[AFR][1000 genomes]
rs73623491	0.82[AFR][1000 genomes]
rs73623499	0.82[AFR][1000 genomes]
rs73623500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625607	1.00[AMR][1000 genomes]
rs73625609	1.00[AMR][1000 genomes]
rs7948870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951819	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv528789	chr11:105014564-105133046	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1045900	chr11:105015999-105138877	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv556220	chr11:105042650-105112018	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1049401	chr11:105096619-105225032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105098800-105102800	Weak transcription	HUVEC	blood vessel
2	chr11:105100400-105102400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:105100800-105104600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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