Variant report

Variant	rs73625137
Chromosome Location	chr13:111409636-111409637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs366866	1.00[AMR][1000 genomes]
rs73625142	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625145	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
2	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
3	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
4	nsv1041716	chr13:111378180-111516489	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv541926	chr13:111378180-111516489	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3380054	chr13:111393000-111411165	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111400800-111409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:111407400-111412600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:111407600-111412600	Enhancers	Hela-S3	cervix
4	chr13:111408000-111410000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:111408200-111410000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:111408400-111409800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:111408400-111410000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:111408400-111410200	Enhancers	NH-A	brain
9	chr13:111408600-111410000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:111408600-111410200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:111408600-111410200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:111408800-111410600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:111408800-111412200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:111409000-111410600	Weak transcription	Ovary	ovary
15	chr13:111409000-111411000	Weak transcription	NHDF-Ad	bronchial
16	chr13:111409200-111410600	Weak transcription	HUVEC	blood vessel
17	chr13:111409200-111410800	Weak transcription	Osteobl	bone
18	chr13:111409600-111410000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:111409600-111410000	Enhancers	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links