Variant report

Variant	rs73627247
Chromosome Location	chr16:77477325-77477326
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:77468850..77470466-chr16:77476156..77478006,2	MCF-7	breast:
2	chr16:77473576..77476044-chr16:77476229..77478435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000216131	Chromatin interaction
ENSG00000140873	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11860135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860450	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861953	1.00[AMR][1000 genomes]
rs11863058	1.00[AMR][1000 genomes]
rs11863302	1.00[AMR][1000 genomes]
rs11865504	1.00[AMR][1000 genomes]
rs59735826	1.00[AMR][1000 genomes]
rs7195122	1.00[AMR][1000 genomes]
rs7204363	1.00[AMR][1000 genomes]
rs73635314	1.00[AMR][1000 genomes]
rs73635353	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057416	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065048	chr16:77003426-77675163	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	esv2830376	chr16:77014551-77658185	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1065149	chr16:77032082-77671890	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1056676	chr16:77139682-77854848	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv1066258	chr16:77229953-77521919	Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv542968	chr16:77229953-77521919	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2761916	chr16:77277005-77555833	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059194	chr16:77281068-77745928	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv542969	chr16:77281068-77745928	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1061875	chr16:77451850-78003403	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv906957	chr16:77457066-77643421	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv869119	chr16:77458671-78008053	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:77473600-77477400	Weak transcription	Adipose Nuclei	Adipose
2	chr16:77476400-77477400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:77476600-77477400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr16:77476600-77477600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr16:77476800-77477400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr16:77476800-77477400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr16:77476800-77477400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:77476800-77477600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr16:77476800-77477600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr16:77477000-77477400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:77477000-77477400	Flanking Active TSS	Brain Cingulate Gyrus	brain
12	chr16:77477000-77477400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
13	chr16:77477000-77477600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr16:77477000-77478000	Bivalent Enhancer	Fetal Brain Female	brain
15	chr16:77477000-77485200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr16:77477200-77477600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr16:77477200-77477600	Bivalent Enhancer	Brain Hippocampus Middle	brain
18	chr16:77477200-77477800	Enhancers	Brain Angular Gyrus	brain
19	chr16:77477200-77477800	Enhancers	Brain Substantia Nigra	brain
20	chr16:77477200-77478000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:77477200-77478400	Enhancers	Brain Germinal Matrix	brain

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