Variant report

Variant	rs73627630
Chromosome Location	chr6:131748843-131748844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73627637	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73627649	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131741600-131772600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:131743000-131762800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:131746800-131749600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:131747000-131751400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:131747800-131749000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:131747800-131749000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:131747800-131749000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:131747800-131749000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:131748000-131749200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:131748000-131749200	Enhancers	Primary T cells from cord blood	blood
11	chr6:131748000-131749200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:131748400-131749000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:131748400-131749200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:131748600-131749200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:131748800-131755600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:131748800-131761400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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