Variant report

Variant	rs73629103
Chromosome Location	chr8:42909838-42909839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:57913947..57916769-chr8:42908901..42912808,3	MCF-7	breast:
2	chr8:42749450..42753570-chr8:42908450..42913824,10	K562	blood:
3	chr8:42899640..42902400-chr8:42908598..42910589,2	K562	blood:
4	chr8:42880468..42883238-chr8:42908903..42910808,2	K562	blood:
5	chr8:42908249..42910556-chr8:42993744..42996687,2	K562	blood:
6	chr8:42909717..42915258-chr8:42945286..42950388,10	K562	blood:
7	chr8:42909056..42911207-chr8:42993744..42996066,2	K562	blood:
8	chr8:42901825..42903522-chr8:42909092..42911186,2	K562	blood:
9	chr8:42747025..42751990-chr8:42908756..42912609,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000168172	Chromatin interaction
ENSG00000165102	Chromatin interaction
ENSG00000120925	Chromatin interaction
ENSG00000185900	Chromatin interaction
ENSG00000266044	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10453137	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10675533	0.87[EUR][1000 genomes]
rs11984488	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11984550	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11984732	0.81[EUR][1000 genomes]
rs11986255	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11987452	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988102	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11988197	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11988227	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988823	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11990369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11991133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11991458	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11992397	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992567	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11992660	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11992682	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993667	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11995473	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11996604	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11997992	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17622134	0.81[EUR][1000 genomes]
rs2194902	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28799623	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34489103	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57363090	1.00[EUR][1000 genomes]
rs57797146	0.95[EUR][1000 genomes]
rs57986156	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58081556	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58641534	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59164172	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59177170	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59213790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59531993	0.81[EUR][1000 genomes]
rs60443202	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60555023	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60782941	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61224035	0.88[AFR][1000 genomes]
rs61733908	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651368	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6651369	0.90[EUR][1000 genomes]
rs7004940	1.00[EUR][1000 genomes]
rs7008140	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7010367	0.90[EUR][1000 genomes]
rs73627229	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73627242	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627249	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627250	0.83[AFR][1000 genomes]
rs73627252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627273	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627274	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627276	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627278	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627280	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627282	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627294	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73629108	0.85[AFR][1000 genomes]
rs73629110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629152	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629156	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629161	0.90[EUR][1000 genomes]
rs73629163	0.90[EUR][1000 genomes]
rs73629177	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629179	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629182	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629190	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629192	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73629194	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73634666	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73634670	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73634673	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73634677	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73634682	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73634696	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73635313	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73635316	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73635325	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635331	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635345	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635352	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635357	0.81[AFR][1000 genomes]
rs73635362	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635365	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635366	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635368	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73635370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7820326	0.81[EUR][1000 genomes]
rs7838845	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1024688	chr8:42709414-43333639	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv539563	chr8:42709414-43333639	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1033927	chr8:42748842-43575771	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv533812	chr8:42755447-43528350	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv1032781	chr8:42772394-43461484	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv1021281	chr8:42807619-43472678	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv429912	chr8:42852444-43701143	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv869499	chr8:42858608-43541986	Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv916847	chr8:42858611-43541984	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1027779	chr8:42863024-43729296	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv1025336	chr8:42905623-43333638	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
13	nsv539564	chr8:42905623-43333638	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv831302	chr8:42909483-43105520	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42901800-42910600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:42905200-42910400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr8:42905400-42910600	Weak transcription	Pancreas	Pancrea
4	chr8:42906000-42910000	Weak transcription	Gastric	stomach
5	chr8:42906200-42910200	Weak transcription	A549	lung
6	chr8:42906800-42910000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:42906800-42910600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:42907000-42910600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:42907400-42910200	Weak transcription	Fetal Intestine Large	intestine
10	chr8:42907800-42910800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:42908400-42910000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:42909200-42910400	Enhancers	Brain Hippocampus Middle	brain
13	chr8:42909400-42910600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:42909400-42910600	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:42909400-42910600	Enhancers	Brain Substantia Nigra	brain
16	chr8:42909600-42910200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:42909600-42910200	Enhancers	GM12878-XiMat	blood
18	chr8:42909600-42910400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr8:42909600-42910400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:42909600-42910600	Enhancers	Brain Anterior Caudate	brain
21	chr8:42909800-42910000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:42909800-42910000	Enhancers	Lung	lung
23	chr8:42909800-42910200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:42909800-42910200	Enhancers	Hela-S3	cervix
25	chr8:42909800-42910200	Enhancers	K562	blood
26	chr8:42909800-42910200	Enhancers	NHDF-Ad	bronchial
27	chr8:42909800-42910400	Bivalent Enhancer	HepG2	liver
28	chr8:42909800-42910400	Enhancers	NHLF	lung
29	chr8:42909800-42910400	Enhancers	Osteobl	bone
30	chr8:42909800-42910600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:42909800-42910600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr8:42909800-42910600	Enhancers	Fetal Intestine Small	intestine
33	chr8:42909800-42911000	Flanking Active TSS	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links